AI507597 Gene Detail

Summary

• Symbol
  AI507597
• Name
  expressed sequence AI507597

• Feature Type
  lncRNA gene
• IDs
  MGI:2140323
  NCBI Gene: 100165
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:141341681-141342915 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 74.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2140323	lncRNA gene	Chr4:141341337-141342915 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003988	antisense lncRNA gene	Chr4:144695618-144697192 (+)
A/J	MGP_AJ_G0003969	antisense lncRNA gene	Chr4:138388432-138390010 (+)
AKR/J	MGP_AKRJ_G0003946	antisense lncRNA gene	Chr4:142405901-142407477 (+)
BALB/cJ	MGP_BALBcJ_G0003955	antisense lncRNA gene	Chr4:139082982-139084558 (+)
C3H/HeJ	MGP_C3HHeJ_G0003902	antisense lncRNA gene	Chr4:142773577-142775153 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004103	antisense lncRNA gene	Chr4:149732090-149733668 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003587	antisense lncRNA gene	Chr4:131301541-131303117 (+)
CAST/EiJ	MGP_CASTEiJ_G0003865	antisense lncRNA gene	Chr4:141045815-141047390 (+)
CBA/J	MGP_CBAJ_G0003895	antisense lncRNA gene	Chr4:154128509-154130085 (+)
DBA/2J	MGP_DBA2J_G0003911	antisense lncRNA gene	Chr4:138785901-138787479 (+)
FVB/NJ	MGP_FVBNJ_G0003930	antisense lncRNA gene	Chr4:137904933-137906511 (+)
LP/J	MGP_LPJ_G0003991	antisense lncRNA gene	Chr4:144717863-144719437 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003918	antisense lncRNA gene	Chr4:157888798-157890375 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004098	antisense lncRNA gene	Chr4:142924950-142926528 (+)
PWK/PhJ	MGP_PWKPhJ_G0003819	antisense lncRNA gene	Chr4:135677288-135678866 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003765	antisense lncRNA gene	Chr4:138734483-138736063 (+)
WSB/EiJ	MGP_WSBEiJ_G0003901	antisense lncRNA gene	Chr4:143203988-143205562 (+)

Homology

• Gene Tree
  AI507597
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  3 involving AI507597
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073731 (Evidence)
• NCBI Gene
  100165

Representative Sequences			Length	Strain/Species
genomic	100165	NCBI Gene Model | MGI Sequence Detail	1235	C57BL/6J
transcript	NR_033566	RefSeq | MGI Sequence Detail	864	C57BL/6
polypeptide	Q3V2J3	UniProt | EBI | MGI Sequence Detail	68	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for AI507597:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40087	Chr4:141341624-141341626 (+)	-56 bp
Tssr40088	Chr4:141341651-141341700 (+)	-5 bp
Tssr40089	Chr4:141341895-141341904 (+)	219 bp