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Zbtb48 Gene Detail
Summary
  • Symbol
    Zbtb48
  • Name
    zinc finger and BTB domain containing 48
  • Synonyms
    0610011D15Rik, Hkr3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2140248
    NCBI Gene: 100090
  • Gene Overview
    MyGene.info: ZBTB48
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:152019774-152027671 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 82.83 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    113 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2140248
protein coding gene Chr4:152019773-152027671 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029168
protein coding gene Chr4:156116942-156126080 (-)
A/J MGP_AJ_G0029133
protein coding gene Chr4:149553858-149561755 (-)
AKR/J MGP_AKRJ_G0029081
protein coding gene Chr4:153634820-153642717 (-)
BALB/cJ MGP_BALBcJ_G0029149
protein coding gene Chr4:150040658-150048555 (-)
C3H/HeJ MGP_C3HHeJ_G0028870
protein coding gene Chr4:154196853-154204750 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029598
protein coding gene Chr4:161701786-161709683 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026844
protein coding gene Chr4:141921036-141929215 (-)
CAST/EiJ MGP_CASTEiJ_G0028283
protein coding gene Chr4:151538247-151546149 (-)
CBA/J MGP_CBAJ_G0028832
protein coding gene Chr4:166517266-166525163 (-)
DBA/2J MGP_DBA2J_G0028981
protein coding gene Chr4:149615361-149623258 (-)
FVB/NJ MGP_FVBNJ_G0028945
protein coding gene Chr4:148772738-148780635 (-)
LP/J MGP_LPJ_G0029071
protein coding gene Chr4:156031224-156039121 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028972
protein coding gene Chr4:169561285-169569182 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029630
protein coding gene Chr4:154168749-154176646 (-)
PWK/PhJ MGP_PWKPhJ_G0028003
protein coding gene Chr4:145686310-145694237 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027837
protein coding gene Chr4:148447137-148455016 (-)
WSB/EiJ MGP_WSBEiJ_G0028363
protein coding gene Chr4:154331797-154339686 (-)



Homology
more
  • Human Ortholog
    ZBTB48, zinc finger and BTB domain containing 48
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZBTB48, zinc finger and BTB domain containing 48
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HKR3, pp9964, TZAP, ZNF855
  • Links
    NCBI Gene ID: 3104
    neXtProt AC: NX_P10074
    UniProt: P10074

  • Chr Location
    1p36.31; chr1:6579967-6589280 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 3905
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ZBTB48
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028952 Ensembl Gene Model | MGI Sequence Detail 7898 C57BL/6J ±  kb
transcript ENSMUST00000066715 Ensembl | MGI Sequence Detail 2218 Not Applicable  
polypeptide ENSMUSP00000067521 Ensembl | MGI Sequence Detail 681 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    cDNA 27
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory