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Clca4b
Gene Detail
Symbol

Name
ID
Clca4b
chloride channel calcium activated 4B
MGI:2139790
Synonyms
AI747448
Feature Type
protein coding gene
Genetic Map
Chromosome 3
69.20 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr3:144910921-144932529 bp, - strand
From VEGA annotation of GRCm38

  21609 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:40808  Vertebrate Homology Class
1 human; 2 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: CLCA4
Protein SuperFamily: calcium-activated chloride channel
Gene Tree: Clca4b

Human
homologs
CLCA4, chloride channel accessory 4
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 22802
neXtProt AC: NX_Q14CN2

Human Synonyms: CaCC, CaCC2

Human Chr (Location): 1p22.3; chr1:86547076-86580758 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Targeted(5)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Clca4b interacts with 65 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
Expression
cDNA source data(11)
Other mouse links: GEO   Expression Atlas
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000033449 (Evidence)
Ensembl Gene Model ENSMUSG00000074195 (Evidence)
Entrez Gene 99709 (Evidence)
UniGene 440040
DoTS DT.488662
Consensus CDS Project CCDS38660.1
International Mouse Phenotyping Consortium Status Clca4b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033449 VEGA Gene Model | MGI Sequence Detail 21609 C57BL/6J ±  kb
transcript OTTMUST00000084037 VEGA | MGI Sequence Detail 2997 Not Applicable 
polypeptide OTTMUSP00000045226 VEGA | MGI Sequence Detail 925 Not Applicable 

For the selected sequences
All sequences(16) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(185 from dbSNP Build 137)    SNPs within 2kb including multiple locations(201)
Protein-related
information
ResourceIDDescription
InterPro IPR004727 Calcium-activated chloride channel protein
InterPro IPR013642 Chloride channel calcium-activated
InterPro IPR015394 Domain of unknown function DUF1973
InterPro IPR002035 von Willebrand factor, type A
References
(Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(22)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory