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Wdr47
Gene Detail
 Symbol
Name
ID
Wdr47
WD repeat domain 47
MGI:2139593
Synonyms 1810073M12Rik, mKIAA0893
Feature Type protein coding gene
Genetic Map
Chromosome 3
47.38 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:108591279-108645719 bp, + strand
From VEGA annotation of GRCm38

  54441 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8984  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Wdr47

Human
homologs
Human Homolog WDR47, WD repeat domain 47
NCBI Gene ID 22911
neXtProt AC  NX_O94967
Human Chr (Location)  1p13.3; chr1:108970213-109042228 (-)  GRCh38
Alleles
and
phenotypes
All alleles(12) : Gene trapped(9) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process multicellular organismal development
Component cytoplasm, cytoskeleton, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (81)    Tissues (10)    Images (24)
Theiler Stages: 23
Assay TypeResults
RNA in situ 81
cDNA source data(6)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000007257 (Evidence)
Ensembl Gene ModelENSMUSG00000040389 (Evidence)
Entrez Gene99512 (Evidence)
DFCITC1576053
NIA Mouse Gene IndexU003742
Consensus CDS ProjectCCDS17765.1
International Mouse Knockout Project StatusWdr47
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007257 VEGA Gene Model | MGI Sequence Detail 54441 C57BL/6J ±  kb
transcript OTTMUST00000016748 VEGA | MGI Sequence Detail 4222 Not Applicable 
polypeptide OTTMUSP00000007713 VEGA | MGI Sequence Detail 920 Not Applicable 

For the selected sequences
All sequences(59) RefSeq(26) UniProt(4)
Polymorphisms SNPs within 2kb(260 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006595 CTLH, C-terminal LisH motif
InterPro IPR020472 G-protein beta WD-40 repeat
InterPro IPR006594 LisH dimerisation motif
InterPro IPR001680 WD40 repeat
InterPro IPR019775 WD40 repeat, conserved site
InterPro IPR017986 WD40-repeat-containing domain
InterPro IPR015943 WD40/YVTN repeat-like-containing domain
Protein Ontology PR:000032248 WD repeat-containing protein 47
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory