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Tprn
Gene Detail
Symbol

Name
ID
Tprn
taperin
MGI:2139535
Synonyms
C430004E15Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 2
17.11 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:25262618-25269885 bp, + strand
From VEGA annotation of GRCm38

  7268 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:52156  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 chicken; 1 western clawed frog

HCOP human homology predictions: TPRN
Gene Tree: Tprn

Human
homologs
TPRN, taperin
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 286262
neXtProt AC: NX_Q4KMQ1

Human Synonyms: C9orf75, DFNB79

Human Chr (Location): 9q34.3; chr9:137191617-137200711 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human TPRN

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(4) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Tprn interacts with 79 markers (Mir7-1, Mir16-2, Mir23a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process sensory perception of sound
Component cell projection, stereocilium
Function phosphatase binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (12)    Tissues (2)    Images (6)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 12
cDNA source data(42)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(42) cDNA(42)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000011904 (Evidence)
Ensembl Gene Model ENSMUSG00000048707 (Evidence)
Entrez Gene 97031 (Evidence)
UniGene 308539
DFCI TC1578544
DoTS DT.110656402, DT.489897
NIA Mouse Gene Index U001481
Consensus CDS Project CCDS15759.2
International Mouse Phenotyping Consortium Status Tprn
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000011904 VEGA Gene Model | MGI Sequence Detail 7268 C57BL/6J ±  kb
transcript OTTMUST00000028085 VEGA | MGI Sequence Detail 2787 Not Applicable 
polypeptide OTTMUSP00000012725 VEGA | MGI Sequence Detail 749 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(37 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026671 Phostensin/Taperin
InterPro IPR025903 Phostensin/Taperin N-terminal domain
InterPro IPR025907 Phostensin/Taperin PP1-binding domain
Protein Ontology PR:000031473 taperin
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory