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Slc39a12 Gene Detail
Summary
  • Symbol
    Slc39a12
  • Name
    solute carrier family 39 (zinc transporter), member 12
  • Synonyms
    LOC277468
  • Feature Type
    protein coding gene
  • IDs
    MGI:2139274
    NCBI Gene: 277468
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:14388316-14494977 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 10.56 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    303 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2139274
protein coding gene Chr2:14388316-14494978 (.)
129S1/SvImJ MGP_129S1SvImJ_G0025363
protein coding gene Chr2:11912259-12010275 (+)
A/J MGP_AJ_G0025340
protein coding gene Chr2:11465249-11578256 (+)
AKR/J MGP_AKRJ_G0025309
protein coding gene Chr2:11805395-11918284 (+)
BALB/cJ MGP_BALBcJ_G0025336
protein coding gene Chr2:11451036-11568401 (+)
C3H/HeJ MGP_C3HHeJ_G0025096
protein coding gene Chr2:11755834-11867307 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025778
protein coding gene Chr2:12193134-12310447 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023193
protein coding gene Chr2:10984620-11088810 (+)
CAST/EiJ MGP_CASTEiJ_G0024559
protein coding gene Chr2:11702055-11818899 (+)
CBA/J MGP_CBAJ_G0025075
protein coding gene Chr2:12771248-12906778 (+)
DBA/2J MGP_DBA2J_G0025207
protein coding gene Chr2:11374941-11479742 (+)
FVB/NJ MGP_FVBNJ_G0025169
protein coding gene Chr2:11240025-11339132 (+)
LP/J MGP_LPJ_G0025293
protein coding gene Chr2:11826450-11927245 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025201
protein coding gene Chr2:12598950-12722376 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025836
protein coding gene Chr2:11718784-11825227 (+)
PWK/PhJ MGP_PWKPhJ_G0024310
protein coding gene Chr2:11200079-11314329 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024110
protein coding gene Chr2:11755623-11871450 (+)
WSB/EiJ MGP_WSBEiJ_G0024629
protein coding gene Chr2:11846202-11956400 (+)



Homology
more
  • Human Ortholog
    SLC39A12, solute carrier family 39 member 12
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLC39A12, solute carrier family 39 member 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA570F3.1, LZT-Hs8, ZIP-12
  • Links
    NCBI Gene ID: 221074
    neXtProt AC: NX_Q504Y0
    UniProt: Q504Y0

  • Chr Location
    10p12.33; chr10:17951839-18043292 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000036949 Ensembl Gene Model | MGI Sequence Detail 106662 C57BL/6J ±  kb
transcript ENSMUST00000082290 Ensembl | MGI Sequence Detail 2675 Not Applicable  
polypeptide ENSMUSP00000080911 Ensembl | MGI Sequence Detail 689 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 3
Other
Accession IDs
less
MGI:2685577
References
more
  • Summaries
    All 28
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 3
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:254216 Bin BH, et al., Requirement of zinc transporter ZIP10 for epidermal development: Implication of the ZIP10-p63 axis in epithelial homeostasis. Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):12243-12248

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory