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AU015228 Pseudogene Detail
Summary
  • Symbol
    AU015228
  • Name
    expressed sequence AU015228
Location &
Maps
more
  • Sequence Map
    Chr2:129942444-129943763 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 63.19 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    32 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2139152
pseudogene Chr2:129942314-129945295 (+)
129S1/SvImJ MGP_129S1SvImJ_G0011860
pseudogene Chr2:133520614-133521933 (+)
A/J MGP_AJ_G0011850
pseudogene Chr2:128136191-128137510 (+)
AKR/J MGP_AKRJ_G0011818
pseudogene Chr2:131799368-131800687 (+)
BALB/cJ MGP_BALBcJ_G0011829
pseudogene Chr2:128485416-128486735 (+)
C3H/HeJ MGP_C3HHeJ_G0011711
pseudogene Chr2:132260261-132261580 (+)
C57BL/6NJ MGP_C57BL6NJ_G0012133
pseudogene Chr2:137674939-137676258 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0010617
pseudogene Chr2:122881079-122882398 (+)
CAST/EiJ MGP_CASTEiJ_G0011501
pseudogene Chr2:132502741-132504039 (+)
CBA/J MGP_CBAJ_G0011686
pseudogene Chr2:142768405-142769724 (+)
DBA/2J MGP_DBA2J_G0011742
pseudogene Chr2:127525052-127526371 (+)
FVB/NJ MGP_FVBNJ_G0011745
pseudogene Chr2:126145054-126146373 (+)
LP/J MGP_LPJ_G0011809
pseudogene Chr2:133779504-133780823 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0011750
pseudogene Chr2:146633757-146635076 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0012127
pseudogene Chr2:131779268-131780587 (+)
PWK/PhJ MGP_PWKPhJ_G0011348
pseudogene Chr2:127074957-127076721 (+)
SPRET/EiJ MGP_SPRETEiJ_G0011166
pseudogene Chr2:130905469-130906788 (+)
WSB/EiJ MGP_WSBEiJ_G0011522
pseudogene Chr2:132706600-132707919 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving AU015228
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
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Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074804 Ensembl Gene Model | MGI Sequence Detail 1320 C57BL/6J ±  kb
transcript ENSMUST00000121103 Ensembl | MGI Sequence Detail 1320 Not Applicable  
polypeptide NP_001028369 RefSeq | MGI Sequence Detail 439 C57BL/6  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR024550 TFIIEalpha/SarR/Rpc3 HTH domain
    IPR039997 Transcription factor E
    IPR017919 Transcription factor TFE/TFIIEalpha HTH domain
    IPR021600 Transcription factor TFIIE alpha subunit, C-terminal
    IPR002853 Transcription initiation factor IIE subunit alpha, N-terminal
    IPR013083 Zinc finger, RING/FYVE/PHD-type
Molecular
Reagents
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  • All nucleic 6
    cDNA 6

    Microarray probesets 5
References
more
  • Summaries
    All 15
    Phenotypes 3
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
06/23/2022
MGI 6.20
The Jackson Laboratory