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Fibcd1 Gene Detail
Summary
  • Symbol
    Fibcd1
  • Name
    fibrinogen C domain containing 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138953
    NCBI Gene: 98970
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:31813290-31846005 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 21.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138953
protein coding gene Chr2:31813290-31846647 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025591
protein coding gene Chr2:30193687-30230529 (-)
A/J MGP_AJ_G0025569
protein coding gene Chr2:28941806-28975844 (-)
AKR/J MGP_AKRJ_G0025538
protein coding gene Chr2:29936651-29971414 (-)
BALB/cJ MGP_BALBcJ_G0025565
protein coding gene Chr2:29069008-29101921 (-)
C3H/HeJ MGP_C3HHeJ_G0025326
protein coding gene Chr2:29851678-29885850 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026010
protein coding gene Chr2:31134157-31179547 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023418
protein coding gene Chr2:27686037-27719305 (-)
CAST/EiJ MGP_CASTEiJ_G0024788
protein coding gene Chr2:29795710-29830163 (-)
CBA/J MGP_CBAJ_G0025303
protein coding gene Chr2:32266292-32303146 (-)
DBA/2J MGP_DBA2J_G0025436
protein coding gene Chr2:28716120-28751889 (-)
FVB/NJ MGP_FVBNJ_G0025399
protein coding gene Chr2:28566654-28600941 (-)
LP/J MGP_LPJ_G0025522
protein coding gene Chr2:30067415-30103767 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025429
protein coding gene Chr2:32003027-32041224 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026068
protein coding gene Chr2:29852064-29886585 (-)
PWK/PhJ MGP_PWKPhJ_G0024535
protein coding gene Chr2:28606692-28640452 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024335
protein coding gene Chr2:29991066-30023595 (-)
WSB/EiJ MGP_WSBEiJ_G0024856
protein coding gene Chr2:30027545-30063331 (-)



Homology
more
  • Human Ortholog
    FIBCD1, fibrinogen C domain containing 1
  • Vertebrate Orthologs
    12
  • Human Ortholog
    FIBCD1, fibrinogen C domain containing 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 84929
    neXtProt AC: NX_Q8N539
    UniProt: Q8N539

  • Chr Location
    9q34.12; chr9:130902438-130939068 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026841 Ensembl Gene Model | MGI Sequence Detail 32716 C57BL/6J ±  kb
transcript ENSMUST00000028188 Ensembl | MGI Sequence Detail 4751 Not Applicable  
polypeptide ENSMUSP00000028188 Ensembl | MGI Sequence Detail 459 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032818 fibrinogen C domain-containing protein 1
  • InterPro Domains
    IPR002181 Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
    IPR014716 Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
    IPR014715 Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2
    IPR020837 Fibrinogen, conserved site
    IPR036056 Fibrinogen-like, C-terminal
Molecular
Reagents
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  • All nucleic 12
    cDNA 12

    Microarray probesets 3
References
more
  • Summaries
    All 28
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory