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Slc5a12 Gene Detail
Summary
  • Symbol
    Slc5a12
  • Name
    solute carrier family 5 (sodium/glucose cotransporter), member 12
  • Synonyms
    SMCT2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138890
    NCBI Gene: 241612
Location & Maps
more
  • Sequence Map
    Chr2:110597298-110647779 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      50482 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 56.75 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SLC5A12, solute carrier family 5 member 12
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC5A12, solute carrier family 5 member 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SMCT2
  • Links
    NCBI Gene ID: 159963
    neXtProt AC: NX_Q1EHB4

  • Chr Location
    11p14.2; chr11:26667019-26723356 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Slc5a12
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015135 VEGA Gene Model | MGI Sequence Detail 50482 C57BL/6J ±  kb
transcript OTTMUST00000035900 VEGA | MGI Sequence Detail 3529 Not Applicable  
polypeptide OTTMUSP00000016115 VEGA | MGI Sequence Detail 623 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    433 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 10
    Primer pair 1
    Other 1

    Microarray probesets 2
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory