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Atg9a
Gene Detail
Symbol

Name
ID
Atg9a
autophagy related 9A
MGI:2138446
Synonyms
Apg9l1
Feature Type
protein coding gene
Genetic Map
Chromosome 1
38.62 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr1:75180860-75192196 bp, - strand
From VEGA annotation of GRCm38

  11337 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:34495  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Atg9a

Human
homologs
Human Homolog ATG9A, autophagy related 9A
NCBI Gene ID 79065
neXtProt AC  NX_Q7Z3C6
Human Synonyms  APG9L1, mATG9, MGD3208
Human Chr (Location)  2q35; chr2:219219380-219229688 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Spontaneous(1) Targeted(4)
Genomic Mutations involving Atg9a (1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a null mutation all die within 1 day of birth and display impaired autophagy.
 
Alleles Annotated to Human Diseases(1)   
Interactions
Atg9a interacts with 230 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (29 annotations)
Process autophagic vacuole assembly, autophagy, ...
Component autophagic vacuole, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(43)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(43) cDNA(43)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000048480 (Evidence)
Ensembl Gene ModelENSMUSG00000033124 (Evidence)
Entrez Gene245860 (Evidence)
UniGene491221
DFCITC1596242, TC1656355, TC1579947, TC1601368
NIA Mouse Gene IndexU021493
Consensus CDS ProjectCCDS35622.1
International Mouse Knockout Project StatusAtg9a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000048480 VEGA Gene Model | MGI Sequence Detail 11337 C57BL/6J ±  kb
transcript OTTMUST00000124247 VEGA | MGI Sequence Detail 4218 Not Applicable 
polypeptide OTTMUSP00000067641 VEGA | MGI Sequence Detail 847 Not Applicable 

For the selected sequences
All sequences(64) RefSeq(13) UniProt(11)
Polymorphisms
SNPs within 2kb(47 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007241 Autophagy-related protein 9
Protein Ontology PR:000004420 autophagy-related protein 9A
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:200806 Chen D, et al., CCCP-Induced LC3 lipidation depends on Atg9 whereas FIP200/Atg13 and Beclin 1/Atg14 are dispensable. Biochem Biophys Res Commun. 2013 Mar 8;432(2):226-30
All references(39)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory