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AI597479 Gene Detail
Summary
  • Symbol
    AI597479
  • Name
    expressed sequence AI597479
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138299
    NCBI Gene: 98404
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:43137870-43155106 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 22.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    554 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138299
 protein coding gene Chr1:43137870-43155107 (+)
129S1/SvImJ ENSMUSG00200001638
 protein coding gene Chr1:40750822-40768047 (+)
A/J ENSMUSG00195001834
 protein coding gene Chr1:40458254-40475492 (+)
AKR/J ENSMUSG00220003538
 protein coding gene Chr1:40458508-40475739 (+)
BALB/cJ ENSMUSG00180003126
 protein coding gene Chr1:40478822-40496060 (+)
C3H/HeJ ENSMUSG00175000046
 protein coding gene Chr1:40465975-40483219 (+)
C57BL/6NJ ENSMUSG00215002994
 protein coding gene Chr1:40453912-40471150 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014091
 protein coding gene Chr1:37638085-37655309 (+)
CAST/EiJ ENSTCUG00005000746
 protein coding gene Chr1:40532480-40549830 (+)
CBA/J ENSMUSG00210005691
 protein coding gene Chr1:40217495-40234732 (+)
DBA/2J ENSMUSG00185029587
 protein coding gene Chr1:41318642-41335879 (+)
FVB/NJ ENSMUSG00205003702
 protein coding gene Chr1:40411249-40428486 (+)
JF1/MsJ ENSUMUG00000001229
 protein coding gene Chr1:40553446-40570779 (+)
LP/J ENSMUSG00230000845
 protein coding gene Chr1:41364467-41381700 (+)
NOD/ShiLtJ ENSMUSG00190002068
 protein coding gene Chr1:40437175-40454406 (+)
NZO/HlLtJ ENSMUSG00225000316
 protein coding gene Chr1:44600669-44617898 (+)
PWK/PhJ ENSLUMG00010032733
 protein coding gene Chr1:40069846-40087174 (+)
SPRET/EiJ ENSMSPG00010012092
 protein coding gene Chr1:41635238-41650584 (+)
WSB/EiJ ENSIUOG00005003449
 protein coding gene Chr1:40373398-40390633 (+)



Homology
more
  • Human Ortholog
    TSLIG2, tRNA splicing ligase complex subunit 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TSLIG2, tRNA splicing ligase complex subunit 2
  • Synonyms
    asw, C2orf49
  • Links
    NCBI Gene ID: 79074
    UniProt: Q9BVC5

  • Chr Location
    2q12.2; chr2:105337532-105385899 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    6
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 98404 NCBI Gene Model | MGI Sequence Detail 17237 C57BL/6J ±  kb
transcript NM_133818 RefSeq | MGI Sequence Detail 3476 FVB/N  
polypeptide Q922M7 UniProt | EBI | MGI Sequence Detail 232 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 30
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory