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Colgalt2 Gene Detail
Summary
  • Symbol
    Colgalt2
  • Name
    collagen beta(1-O)galactosyltransferase 2
  • Synonyms
    Glt25d2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138232
    NCBI Gene: 269132
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:152399830-152510695 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 64.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1612 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138232
protein coding gene Chr1:152399805-152510695 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016587
protein coding gene Chr1:157164838-157271836 (+)
A/J MGP_AJ_G0016569
protein coding gene Chr1:150831060-150938648 (+)
AKR/J MGP_AKRJ_G0016534
protein coding gene Chr1:155483590-155588193 (+)
BALB/cJ MGP_BALBcJ_G0016529
protein coding gene Chr1:151404089-151511638 (+)
C3H/HeJ MGP_C3HHeJ_G0016354
protein coding gene Chr1:155600733-155709740 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016990
protein coding gene Chr1:162603259-162717879 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014699
protein coding gene Chr1:143150356-143257141 (+)
CAST/EiJ MGP_CASTEiJ_G0015933
protein coding gene Chr1:155091883-155198415 (+)
CBA/J MGP_CBAJ_G0016328
protein coding gene Chr1:168324913-168432445 (+)
DBA/2J MGP_DBA2J_G0016434
protein coding gene Chr1:149857851-149958962 (+)
FVB/NJ MGP_FVBNJ_G0016432
protein coding gene Chr1:148329107-148433897 (+)
LP/J MGP_LPJ_G0016505
protein coding gene Chr1:158264043-158383452 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016458
protein coding gene Chr1:175990419-176093699 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017026
protein coding gene Chr1:155262966-155366740 (+)
PWK/PhJ MGP_PWKPhJ_G0015719
protein coding gene Chr1:148847324-148951172 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015506
protein coding gene Chr1:154084211-154194454 (+)
WSB/EiJ MGP_WSBEiJ_G0015996
protein coding gene Chr1:155329641-155445822 (+)



Homology
more
  • Human Ortholog
    COLGALT2, collagen beta(1-O)galactosyltransferase 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COLGALT2, collagen beta(1-O)galactosyltransferase 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C1orf17, ColGalT 2, GLT25D2
  • Links
    NCBI Gene ID: 23127
    neXtProt AC: NX_Q8IYK4
    UniProt: Q8IYK4

  • Chr Location
    1q25.3; chr1:183929662-184051612 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032649 Ensembl Gene Model | MGI Sequence Detail 110866 C57BL/6J ±  kb
transcript ENSMUST00000044311 Ensembl | MGI Sequence Detail 4093 Not Applicable  
polypeptide ENSMUSP00000037532 Ensembl | MGI Sequence Detail 625 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 14
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 33
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:189252 Tao G, et al., Collagen XIV is important for growth and structural integrity of the myocardium. J Mol Cell Cardiol. 2012 Nov;53(5):626-38

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory