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AA986860 Gene Detail
Summary
  • Symbol
    AA986860
  • Name
    expressed sequence AA986860
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138143
    NCBI Gene: 212439
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:130731976-130744622 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 56.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    161 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138143
protein coding gene Chr1:130731921-130744622 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016440
protein coding gene Chr1:134127830-134143240 (+)
A/J MGP_AJ_G0016423
protein coding gene Chr1:129166452-129179116 (+)
AKR/J MGP_AKRJ_G0016388
protein coding gene Chr1:132972054-132984678 (+)
BALB/cJ MGP_BALBcJ_G0016383
protein coding gene Chr1:129498279-129513976 (+)
C3H/HeJ MGP_C3HHeJ_G0016209
protein coding gene Chr1:133107547-133121412 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016844
protein coding gene Chr1:139113179-139127624 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014558
protein coding gene Chr1:122312762-122325341 (+)
CAST/EiJ MGP_CASTEiJ_G0015789
protein coding gene Chr1:132100788-132114484 (+)
CBA/J MGP_CBAJ_G0016181
protein coding gene Chr1:143912204-143927602 (+)
DBA/2J MGP_DBA2J_G0016288
protein coding gene Chr1:128130196-128143118 (+)
FVB/NJ MGP_FVBNJ_G0016287
protein coding gene Chr1:126773654-126786287 (+)
LP/J MGP_LPJ_G0016359
protein coding gene Chr1:135443670-135456267 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016312
protein coding gene Chr1:149681246-149695118 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016880
protein coding gene Chr1:132735652-132748502 (+)
PWK/PhJ MGP_PWKPhJ_G0015575
protein coding gene Chr1:127104821-127117678 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015362
protein coding gene Chr1:131661120-131676014 (+)
WSB/EiJ MGP_WSBEiJ_G0015851
protein coding gene Chr1:132697602-132711559 (+)



Homology
more
  • Human Ortholog
    C1orf116, chromosome 1 open reading frame 116
  • Vertebrate Orthologs
    8
  • Human Ortholog
    C1orf116, chromosome 1 open reading frame 116
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SARG
  • Links
    NCBI Gene ID: 79098
    neXtProt AC: NX_Q9BW04
    UniProt: Q9BW04

  • Chr Location
    1q32.1; chr1:207018521-207032761 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000042510 Ensembl Gene Model | MGI Sequence Detail 12647 C57BL/6J ±  kb
transcript ENSMUST00000039323 Ensembl | MGI Sequence Detail 2909 Not Applicable  
polypeptide ENSMUSP00000046172 Ensembl | MGI Sequence Detail 606 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 29
    cDNA 29

    Microarray probesets 4
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory