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Pom121 Gene Detail
Summary
  • Symbol
    Pom121
  • Name
    nuclear pore membrane protein 121
  • Synonyms
    2610027A18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2137624
    NCBI Gene: 107939
  • Gene Overview
    MyGene.info: POM121
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:135376141-135394546 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 75.16 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    110 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2137624
protein coding gene Chr5:135376140-135404733 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030182
protein coding gene Chr5:139899694-139919075 (-)
A/J MGP_AJ_G0030150
protein coding gene Chr5:133911246-133937908 (-)
AKR/J MGP_AKRJ_G0030083
protein coding gene Chr5:138263801-138282750 (-)
BALB/cJ MGP_BALBcJ_G0030160
protein coding gene Chr5:135266168-135284701 (-)
C3H/HeJ MGP_C3HHeJ_G0029876
protein coding gene Chr5:138830749-138850283 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030613
protein coding gene Chr5:145122750-145144465 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027836
protein coding gene Chr5:128209208-128227789 (-)
CAST/EiJ MGP_CASTEiJ_G0029285
protein coding gene Chr5:138239166-138260142 (-)
CBA/J MGP_CBAJ_G0029846
protein coding gene Chr5:150816480-150841720 (-)
DBA/2J MGP_DBA2J_G0029997
protein coding gene Chr5:133821195-133839874 (-)
FVB/NJ MGP_FVBNJ_G0029952
protein coding gene Chr5:132948555-132971232 (-)
LP/J MGP_LPJ_G0030085
protein coding gene Chr5:140353729-140374991 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029984
protein coding gene Chr5:153812336-153832462 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030653
protein coding gene Chr5:138008633-138028677 (-)
PWK/PhJ MGP_PWKPhJ_G0029000
protein coding gene Chr5:132854839-132876652 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028835
protein coding gene Chr5:135571595-135589643 (-)
WSB/EiJ MGP_WSBEiJ_G0029359
protein coding gene Chr5:138762700-138782883 (-)



Homology
more
  • Human Ortholog
    POM121, POM121 transmembrane nucleoporin
  • Vertebrate Orthologs
    9
  • Human Ortholog
    POM121, POM121 transmembrane nucleoporin
    Orthology source: HomoloGene, HGNC
  • Synonyms
    P145, POM121A
  • Links
    NCBI Gene ID: 9883
    neXtProt AC: NX_Q96HA1
    UniProt: Q96HA1

  • Chr Location
    7q11.23; chr7:72879335-72951440 (+)  GRCh38.p7

  • Human Ortholog
    POM121C, POM121 transmembrane nucleoporin C
    Orthology source: HomoloGene
  • Synonyms
    POM121-2
  • Links
    NCBI Gene ID: 100101267
    UniProt: A8CG34

  • Chr Location
    7q11.23; chr7:75416781-75486288 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000053293 Ensembl Gene Model | MGI Sequence Detail 18406 C57BL/6J ±  kb
transcript ENSMUST00000111171 Ensembl | MGI Sequence Detail 5580 Not Applicable  
polypeptide ENSMUSP00000106801 Ensembl | MGI Sequence Detail 1200 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR026054 Nuclear pore complex protein
    IPR026090 Nuclear pore protein POM121
Molecular
Reagents
less
  • All nucleic 15
    Genomic 4
    cDNA 9
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916472, MGI:2141316
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory