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Trim16 Gene Detail
Summary
  • Symbol
    Trim16
  • Name
    tripartite motif-containing 16
  • Synonyms
    9130006M08Rik, EBBP
  • Feature Type
    protein coding gene
  • IDs
    MGI:2137356
    NCBI Gene: 94092
  • Gene Overview
    MyGene.info: TRIM16
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:62820191-62842948 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 38.75 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    238 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2137356
protein coding gene Chr11:62820191-62850808 (.)
129S1/SvImJ MGP_129S1SvImJ_G0018463
protein coding gene Chr11:62902795-62940773 (+)
A/J MGP_AJ_G0018432
protein coding gene Chr11:60565436-60596997 (+)
AKR/J MGP_AKRJ_G0018401
protein coding gene Chr11:62433677-62464415 (+)
BALB/cJ MGP_BALBcJ_G0018403
protein coding gene Chr11:60844209-60875555 (+)
C3H/HeJ MGP_C3HHeJ_G0018216
protein coding gene Chr11:62407269-62439772 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018855
protein coding gene Chr11:64875298-64906846 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016499
protein coding gene Chr11:57646012-57677257 (+)
CAST/EiJ MGP_CASTEiJ_G0017772
protein coding gene Chr11:62560434-62597661 (+)
CBA/J MGP_CBAJ_G0018190
protein coding gene Chr11:67666543-67704220 (+)
DBA/2J MGP_DBA2J_G0018299
protein coding gene Chr11:60117244-60149241 (+)
FVB/NJ MGP_FVBNJ_G0018289
protein coding gene Chr11:59784952-59817063 (+)
LP/J MGP_LPJ_G0018371
protein coding gene Chr11:63435548-63469409 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018313
protein coding gene Chr11:68648656-68688320 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018896
protein coding gene Chr11:62590076-62623140 (+)
PWK/PhJ MGP_PWKPhJ_G0017546
protein coding gene Chr11:60735519-60768877 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017336
protein coding gene Chr11:62436234-62474454 (+)
WSB/EiJ MGP_WSBEiJ_G0017825
protein coding gene Chr11:62208249-62240662 (+)



Homology
more
  • Human Ortholog
    TRIM16, tripartite motif containing 16
  • Vertebrate Orthologs
    8
  • Human Ortholog
    TRIM16, tripartite motif containing 16
    Orthology source: HomoloGene, HGNC
  • Synonyms
    EBBP
  • Links
    NCBI Gene ID: 10626
    neXtProt AC: NX_O95361
    UniProt: O95361

  • Chr Location
    17p12; chr17:15627966-15682879 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 94092 NCBI Gene Model | MGI Sequence Detail 22758 C57BL/6J ±  kb
transcript NM_053169 RefSeq | MGI Sequence Detail 3896 C57BL/6  
polypeptide Q99PP9 UniProt | EBI | MGI Sequence Detail 556 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 29
    Genomic 1
    cDNA 28

    Microarray probesets 4
Other
Accession IDs
less
MGI:1918832, MGI:2144201
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:195171 Stefanov AN, et al., Positional cloning reveals strain-dependent expression of Trim16 to alter susceptibility to bleomycin-induced pulmonary fibrosis in mice. PLoS Genet. 2013 Jan;9(1):e1003203

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory