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Trim9
Gene Detail
Symbol

Name
ID
Trim9
tripartite motif-containing 9
MGI:2137354
Synonyms
C030048G07Rik, mKIAA0282
Feature Type
protein coding gene
Genetic Map
Chromosome 12
29.07 cM, cytoband C3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr12:70244539-70347614 bp, - strand
From Ensembl annotation of GRCm38

  103076 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9045  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Trim9

Human
homologs
Human Homolog TRIM9, tripartite motif containing 9
NCBI Gene ID 114088
neXtProt AC  NX_Q9C026
Human Synonyms  RNF91, SPRING
Human Chr (Location)  14q22.1; chr14:50975261-51095704 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Trim9 interacts with 331 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Expression
Literature Summary: (10 records)
Data Summary: Results (486)    Tissues (224)    Images (81)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 484
RT-PCR 2
cDNA source data(60)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(69) cDNA(66) Primer pair(2) Other(1)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000021071 (Evidence)
Entrez Gene94090 (Evidence)
UniGene184012
DFCITC1576403, TC1589167, TC1590597, TC1602589, TC1629430, TC1686049, TC1702512, TC1757144
DoTSDT.101275003, DT.101297282, DT.101352614, DT.101383532, DT.50315744, DT.91325948, DT.91338531
NIA Mouse Gene IndexU034046, U364598
EC6.3.2.-
Consensus CDS ProjectCCDS49077.1, CCDS49078.1, CCDS49079.1
International Mouse Knockout Project StatusTrim9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021071 Ensembl Gene Model | MGI Sequence Detail 103076 C57BL/6J ±  kb
transcript ENSMUST00000110522 Ensembl | MGI Sequence Detail 4663 Not Applicable 
polypeptide ENSMUSP00000106151 Ensembl | MGI Sequence Detail 788 Not Applicable 

For the selected sequences
All sequences(81) RefSeq(33) UniProt(9)
Polymorphisms
SNPs within 2kb(1049 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1051)
Protein-related
information
ResourceIDDescription
InterPro IPR001870 B30.2/SPRY domain
InterPro IPR003649 B-box, C-terminal
InterPro IPR008985 Concanavalin A-like lectin/glucanases superfamily
InterPro IPR017903 COS domain
InterPro IPR003961 Fibronectin, type III
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003877 SPla/RYanodine receptor SPRY
InterPro IPR000315 Zinc finger, B-box
InterPro IPR018957 Zinc finger, C3HC4 RING-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
InterPro IPR017907 Zinc finger, RING-type, conserved site
Protein Ontology PR:000016667 E3 ubiquitin-protein ligase TRIM9
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract. Front Neurosci. 2012;6:130
All references(42)
Other
accession IDs
MGI:1924734, MGI:2144887

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory