About   Help   FAQ
Tm2d1 Gene Detail
Summary
  • Symbol
    Tm2d1
  • Name
    TM2 domain containing 1
  • Synonyms
    2310026L18Rik, Bbp
  • Feature Type
    protein coding gene
  • IDs
    MGI:2137022
    NCBI Gene: 94043
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:98355370-98383279 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 45.60 cM, cytoband C6
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    329 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2137022
protein coding gene Chr4:98355370-98383306 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028471
protein coding gene Chr4:98514795-98546077 (-)
A/J MGP_AJ_G0028434
protein coding gene Chr4:95086269-95116300 (-)
AKR/J MGP_AKRJ_G0028381
protein coding gene Chr4:97392436-97421393 (-)
BALB/cJ MGP_BALBcJ_G0028452
protein coding gene Chr4:95334930-95363386 (-)
C3H/HeJ MGP_C3HHeJ_G0028165
protein coding gene Chr4:98191415-98218897 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028891
protein coding gene Chr4:102285684-102316293 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026183
protein coding gene Chr4:90479818-90506989 (-)
CAST/EiJ MGP_CASTEiJ_G0027605
protein coding gene Chr4:95988782-96025859 (-)
CBA/J MGP_CBAJ_G0028134
protein coding gene Chr4:105366994-105397496 (-)
DBA/2J MGP_DBA2J_G0028284
protein coding gene Chr4:94846571-94874402 (-)
FVB/NJ MGP_FVBNJ_G0028251
protein coding gene Chr4:93695693-93726719 (-)
LP/J MGP_LPJ_G0028384
protein coding gene Chr4:98831775-98861109 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028279
protein coding gene Chr4:111151559-111180745 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028929
protein coding gene Chr4:97641444-97671051 (-)
PWK/PhJ MGP_PWKPhJ_G0027330
protein coding gene Chr4:92989193-93016353 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027151
protein coding gene Chr4:95100871-95128505 (-)
WSB/EiJ MGP_WSBEiJ_G0027683
protein coding gene Chr4:97767274-97798401 (-)



Homology
more
  • Human Ortholog
    TM2D1, TM2 domain containing 1
  • Vertebrate Orthologs
    11
  • Human Ortholog
    TM2D1, TM2 domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BBP
  • Links
    NCBI Gene ID: 83941
    neXtProt AC: NX_Q9BX74
    UniProt: Q9BX74

  • Chr Location
    1p31.3; chr1:61681047-61725423 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12928
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TM2D1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 94043 NCBI Gene Model | MGI Sequence Detail 27910 C57BL/6J ±  kb
transcript NM_053157 RefSeq | MGI Sequence Detail 1080 Not Specified  
polypeptide Q99MB3 UniProt | EBI | MGI Sequence Detail 208 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR007829 TM2 domain
Molecular
Reagents
less
  • All nucleic 46
    cDNA 46

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916836, MGI:2145939
References
more
  • Summaries
    All 34
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory