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Allc Gene Detail
Summary
  • Symbol
    Allc
  • Name
    allantoicase
  • Synonyms
    1700012B22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136971
    NCBI Gene: 94041
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:28553755-28582523 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 10.97 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    297 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136971
protein coding gene Chr12:28553755-28582552 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019641
protein coding gene Chr12:26380230-26411873 (-)
A/J MGP_AJ_G0019608
protein coding gene Chr12:25676542-25705268 (-)
AKR/J MGP_AKRJ_G0019579
protein coding gene Chr12:26532695-26561815 (-)
BALB/cJ MGP_BALBcJ_G0019585
protein coding gene Chr12:25924323-25947028 (-)
C3H/HeJ MGP_C3HHeJ_G0019389
protein coding gene Chr12:26392344-26414430 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020032
protein coding gene Chr12:27221661-27261683 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017657
protein coding gene Chr12:25030225-25054179 (-)
CAST/EiJ MGP_CASTEiJ_G0018944
protein coding gene Chr12:21356435-21383445 (-)
CBA/J MGP_CBAJ_G0019360
protein coding gene Chr12:28196802-28225261 (-)
DBA/2J MGP_DBA2J_G0019474
protein coding gene Chr12:25524441-25550069 (-)
FVB/NJ MGP_FVBNJ_G0019465
protein coding gene Chr12:25328923-25358269 (-)
LP/J MGP_LPJ_G0019544
protein coding gene Chr12:26468833-26500882 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019500
protein coding gene Chr12:27823559-27853916 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020072
protein coding gene Chr12:26050337-26078968 (-)
PWK/PhJ MGP_PWKPhJ_G0018711
protein coding gene Chr12:20232850-20262595 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018499
protein coding gene Chr12:20623272-20659040 (-)
WSB/EiJ MGP_WSBEiJ_G0018995
protein coding gene Chr12:26249895-26273122 (-)



Homology
more
  • Human Ortholog
    ALLC, allantoicase
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ALLC, allantoicase
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ALC
  • Links
    NCBI Gene ID: 55821
    neXtProt AC: NX_Q8N6M5
    UniProt: Q8N6M5

  • Chr Location
    2p25.3; chr2:3645368-3702671 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 6202
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ALLC
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020636 Ensembl Gene Model | MGI Sequence Detail 28769 C57BL/6J ±  kb
transcript ENSMUST00000110917 Ensembl | MGI Sequence Detail 1384 Not Applicable  
polypeptide ENSMUSP00000106542 Ensembl | MGI Sequence Detail 414 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 14
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGI:1923645
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory