About   Help   FAQ
Allc
Gene Detail
Symbol

Name
ID
Allc
allantoicase
MGI:2136971
Synonyms
1700012B22Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 12
10.97 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr12:28553755-28582523 bp, - strand
From VEGA annotation of GRCm38

  28769 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:6202  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Allc

Human
homologs
Human Homolog ALLC, allantoicase
NCBI Gene ID 55821
neXtProt AC  NX_Q8N6M5
Human Synonyms  ALC
Human Chr (Location)  2q35; chr2:3658196-3702671 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Allc interacts with 35 markers (Mir92-1, Mir124a-1, Mir124a-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process allantoin catabolic process, allantoin metabolic process
Component cellular_component
Function allantoicase activity, hydrolase activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(15) cDNA(13) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000023258 (Evidence)
Ensembl Gene ModelENSMUSG00000020636 (Evidence)
Entrez Gene94041 (Evidence)
UniGene84927
DFCITC1756091, TC1587053
DoTSDT.94154653, DT.524138, DT.60118058
NIA Mouse Gene IndexU033862
EC3.5.3.4
Consensus CDS ProjectCCDS25850.1
International Mouse Knockout Project StatusAllc
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023258 VEGA Gene Model | MGI Sequence Detail 28769 C57BL/6J ±  kb
transcript OTTMUST00000056310 VEGA | MGI Sequence Detail 1500 Not Applicable 
polypeptide OTTMUSP00000027048 VEGA | MGI Sequence Detail 414 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(311 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005164 Allantoicase
InterPro IPR015908 Allantoicase domain
InterPro IPR008979 Galactose-binding domain-like
Protein Ontology PR:000032772 allantoicase
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(31)
Other
accession IDs
MGI:1923645

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
12/16/2014
MGI 5.20
The Jackson Laboratory