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Clmn Gene Detail
Summary
  • Symbol
    Clmn
  • Name
    calmin
  • Synonyms
    9330188N17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136957
    NCBI Gene: 94040
Location & Maps
more
  • Sequence Map
    Chr12:104763114-104865076 bp, - strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      101963 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 54.91 cM, cytoband F1
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CLMN, calmin
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CLMN, calmin
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 79789
    neXtProt AC: NX_Q96JQ2

  • Chr Location
    14q32.13; chr14:95181939-95319908 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    1
  • Gene trapped
    5
  • Targeted
    4
  • Genomic Mutations
    1 involving Clmn
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 94040 NCBI Gene Model | MGI Sequence Detail 101963 C57BL/6J ±  kb
transcript NR_104438 RefSeq | MGI Sequence Detail 12114 C57BL/6  
polypeptide Q8C5W0 UniProt | EBI | MGI Sequence Detail 1052 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    997 from dbSNP Build 142
Protein
Information
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  • UniProt
    5 Sequences
  • Protein Ontology
  • InterPro Domains
    IPR001589 Actinin-type actin-binding domain, conserved site
    IPR001715 Calponin homology domain
Molecular
Reagents
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  • All nucleic 70
    cDNA 68
    Primer pair 2

    Microarray probesets 10
Other
Accession IDs
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MGI:2144820, MGI:2144884
References
more
  • Summaries
    All 34
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:69942 Ishisaki Z, et al., Calmin, a protein with calponin homology and transmembrane domains expressed in maturing spermatogenic cells. Genomics. 2001 Jun 1;74(2):172-9
  • Latest
    J:178525 Marzinke MA, et al., The all-trans retinoic acid (atRA)-regulated gene Calmin (Clmn) regulates cell cycle exit and neurite outgrowth in murine neuroblastoma (Neuro2a) cells. Exp Cell Res. 2012 Jan 1;318(1):85-93

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory