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Clec2h Gene Detail
Summary
  • Symbol
    Clec2h
  • Name
    C-type lectin domain family 2, member h
  • Synonyms
    Clrf
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136934
    NCBI Gene: 94071
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:128662385-128677374 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 63.07 cM, cytoband F3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136934
protein coding gene Chr6:128662385-128677374 (.)
129S1/SvImJ MGP_129S1SvImJ_G0031333
protein coding gene Chr6:132295672-132311805 (+)
A/J MGP_AJ_G0031304
protein coding gene Chr6:127226252-127241892 (+)
AKR/J MGP_AKRJ_G0031231
protein coding gene Chr6:130647852-130664584 (+)
BALB/cJ MGP_BALBcJ_G0031311
protein coding gene Chr6:126820851-126835150 (+)
C3H/HeJ MGP_C3HHeJ_G0031035
protein coding gene Chr6:130818281-130835264 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031768
protein coding gene Chr6:135737521-135754092 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028913
protein coding gene Chr6:124545324-124553562 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0030996
protein coding gene Chr6:141003016-141020550 (+)
DBA/2J MGP_DBA2J_G0031150
protein coding gene Chr6:126137286-126151286 (+)
FVB/NJ MGP_FVBNJ_G0031100
protein coding gene Chr6:125039989-125054408 (+)
LP/J MGP_LPJ_G0031232
protein coding gene Chr6:132442955-132465060 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031138
protein coding gene Chr6:144822665-144836622 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031801
protein coding gene Chr6:130665407-130680821 (+)
PWK/PhJ MGP_PWKPhJ_G0030129
protein coding gene Chr6:124414769-124437673 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029957
protein coding gene Chr6:128788675-128802016 (+)
WSB/EiJ MGP_WSBEiJ_G0030501
protein coding gene Chr6:131069445-131084439 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 94071 NCBI Gene Model | MGI Sequence Detail 14990 C57BL/6J ±  kb
transcript NM_053165 RefSeq | MGI Sequence Detail 2160 C57BL/6  
polypeptide Q8C1T8 UniProt | EBI | MGI Sequence Detail 218 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 4
References
more
  • Summaries
    All 20
    Gene Ontology 3
    Phenotypes 1
  • Earliest
    J:69859 Plougastel B, et al., Cloning of Clr, a new family of lectin-like genes localized between mouse Nkrp1a and Cd69. Immunogenetics. 2001 Apr;53(3):209-14
  • Latest
    J:192147 Kveberg L, et al., Phylogenetic and functional conservation of the NKR-P1F and NKR-P1G receptors in rat and mouse. Immunogenetics. 2011 Jul;63(7):429-36

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory