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B3galt5
Gene Detail
Symbol

Name
ID
B3galt5
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
MGI:2136878
Synonyms
1190002B21Rik, b3Galt-V
Feature Type
protein coding gene
Genetic Map
Chromosome 16
56.88 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr16:96235801-96319859 bp, + strand
From VEGA annotation of GRCm38

  84059 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13230  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 6 western clawed frog

HCOP human homology predictions: B3GALT5
Gene Tree: B3galt5

Human
homologs
B3GALT5, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 10317
neXtProt AC: NX_Q9Y2C3

Human Synonyms: B3GalT-V, B3GalTx, B3T5, beta-1,3-GalTase 5, beta3Gal-T5, beta-3-Gx-T5, GLCT5

Human Chr (Location): 21q22.3; chr21:39612940-39662889 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Genomic Mutations involving B3galt5 (2)
Incidental mutations (data from APF )
 
Homozygous mice for a targeted mutation appear normal.
 
Mutations Annotated to Human Diseases (1)   
Interactions
B3galt5 interacts with 331 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (5 records)
Data Summary: Results (250)    Tissues (183)    Images (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 142
In situ reporter (knock in) 45
Northern blot 7
RT-PCR 56
cDNA source data(18)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(22) cDNA(18) Primer pair(4)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000020397 (Evidence)
Ensembl Gene Model ENSMUSG00000074892 (Evidence)
Entrez Gene 93961 (Evidence)
UniGene 154783
DFCI TC1599247, TC1600169
DoTS DT.110714512, DT.94223197, DT.50315391, DT.55156775
NIA Mouse Gene Index U017419
EC 2.4.1.-
Consensus CDS Project CCDS28356.1
International Mouse Phenotyping Consortium Status B3galt5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000020397 VEGA Gene Model | MGI Sequence Detail 84059 C57BL/6J ±  kb
transcript OTTMUST00000048370 VEGA | MGI Sequence Detail 5282 Not Applicable 
polypeptide OTTMUSP00000022150 VEGA | MGI Sequence Detail 308 Not Applicable 

For the selected sequences
All sequences(48) RefSeq(8) UniProt(1)
Polymorphisms
SNPs within 2kb(403 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002659 Glycosyl transferase, family 31
Protein Ontology PR:000004586 beta-1,3-galactosyltransferase 5
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)
Other
accession IDs
MGI:1916121, MGI:2146583

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory