B3galt5 MGI Mouse Gene Detail - MGI:2136878 - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5

B3galt5 Gene Detail

Symbol

B3galt5
Name

UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
Synonyms

1190002B21Rik, b3Galt-V

Feature Type

protein coding gene
IDs

MGI:2136878
NCBI Gene: 93961
Gene Overview

MyGene.info: B3GALT5
Alliance

gene page

Sequence Map

Chr16:96235801-96319859 bp, + strand
From VEGA annotation of GRCm38

Mouse Genome Browser
Download
Sequence

84059 bp ± kb flank
Genome Browsers

VEGA | Ensembl | UCSC | NCBI

Genetic Map

Chromosome 16, 56.88 cM
Mapping Data

3 experiments

Human Ortholog

B3GALT5, beta-1,3-galactosyltransferase 5

Vertebrate Orthologs

14

Human Ortholog

B3GALT5, beta-1,3-galactosyltransferase 5
Orthology source: HomoloGene, HGNC
Synonyms

B3GalT-V, B3GalTx, B3T5, beta-1,3-GalTase 5, beta3Gal-T5, beta-3-Gx-T5, GLCT5
Links

HGNC:920

NCBI Gene ID: 10317

neXtProt AC: NX_Q9Y2C3

UniProt: Q9Y2C3
Chr Location

21q22.2; chr21:39612940-39662889 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 13230
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;6 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: B3GALT5
Gene Tree

B3galt5

less

References

3 with disease annotations

less

Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
24 phenotype references

All Mutations and Alleles

6
Targeted

6
Genomic Mutations

5 involving B3galt5
Incidental Mutations

APF
Find Mice (IMSR)

3 strains or lines available

Homozygous mice for a targeted mutation appear normal.

less

All GO Annotations

8
GO References

2

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	receptor binding	RNA binding	transcription	transferase	transporter

Biological Process

nucleic acid-templated transcription	carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

250
Tissues

183
cDNA Data

18
Literature Summary

5

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

less

B3galt5 interacts with 331 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

less

All Sequences

43
RefSeq

10
UniProt

1
CCDS

CCDS28356.1
UniGene

154783

			Length	Strain/Species	Flank
genomic	OTTMUSG00000020397	VEGA Gene Model \| MGI Sequence Detail	84059	C57BL/6J	± kb
transcript	OTTMUST00000048370	VEGA \| MGI Sequence Detail	5282	Not Applicable
polypeptide	OTTMUSP00000022150	VEGA \| MGI Sequence Detail	308	Not Applicable

less

SNPs within 2kb

401 from dbSNP Build 142

less

UniProt

1 Sequence
EC

2.4.1.-
InterPro Domains

IPR002659 Glycosyl transferase, family 31

IPR029044 Nucleotide-diphospho-sugar transferases

less

All nucleic 22

cDNA 18

Primer pair 4

Microarray probesets 6

less

MGI:1916121, MGI:2146583

Summaries

All 51

Developmental Gene Expression 5

Diseases 3

Gene Ontology 2

Phenotypes 24
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:241597 Raveau M, et al., Brain ventriculomegaly in Down syndrome mice is caused by Pcp4 dose-dependent cilia dysfunction. Hum Mol Genet. 2017 Mar 01;26(5):923-931

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 04/03/2018 MGI 6.11