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B3galt5 Gene Detail
Summary
  • Symbol
    B3galt5
  • Name
    UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
  • Synonyms
    1190002B21Rik, b3Galt-V
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136878
    NCBI Gene: 93961
  • Gene Overview
    MyGene.info: B3GALT5
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:96235801-96319859 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 56.88 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    401 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136878
 protein coding gene Chr16:96235801-96319859 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023084
 protein coding gene Chr16:97606488-97695144 (+)
A/J MGP_AJ_G0023052
 protein coding gene Chr16:92975745-93056510 (+)
AKR/J MGP_AKRJ_G0023022
 protein coding gene Chr16:95848892-95934239 (+)
BALB/cJ MGP_BALBcJ_G0023054
 protein coding gene Chr16:93535824-93622683 (+)
C3H/HeJ MGP_C3HHeJ_G0022815
 protein coding gene Chr16:96368385-96465079 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023501
 protein coding gene Chr16:100707263-100795587 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021003
 protein coding gene Chr16:90833796-90921806 (+)
CAST/EiJ MGP_CASTEiJ_G0022335
 protein coding gene Chr16:97173892-97258278 (+)
CBA/J MGP_CBAJ_G0022784
 protein coding gene Chr16:105046134-105147838 (+)
DBA/2J MGP_DBA2J_G0022918
 protein coding gene Chr16:92864275-92948375 (+)
FVB/NJ MGP_FVBNJ_G0022892
 protein coding gene Chr16:92042788-92123804 (+)
LP/J MGP_LPJ_G0022988
 protein coding gene Chr16:97241998-97334591 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022913
 protein coding gene Chr16:109272166-109370444 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023519
 protein coding gene Chr16:96388563-96474604 (+)
PWK/PhJ MGP_PWKPhJ_G0022079
 protein coding gene Chr16:93162281-93245388 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021909
 protein coding gene Chr16:95928531-96013054 (+)
WSB/EiJ MGP_WSBEiJ_G0022385
 protein coding gene Chr16:96643127-96730090 (+)



Homology
more
  • Human Ortholog
    B3GALT5, beta-1,3-galactosyltransferase 5
  • Vertebrate Orthologs
    14
  • Human Ortholog
    B3GALT5, beta-1,3-galactosyltransferase 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    B3GalT-V, B3GalTx, B3T5, beta-1,3-GalTase 5, beta3Gal-T5, beta-3-Gx-T5, GLCT5
  • Links
    NCBI Gene ID: 10317
    neXtProt AC: NX_Q9Y2C3
    UniProt: Q9Y2C3

  • Chr Location
    21q22.2; chr21:39612940-39662889 (+)  GRCh38.p7
Human Diseases
less
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    27 phenotype references
Homozygous mice for a targeted mutation appear normal.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    881
  • Tissues
    183
  • cDNA Data
    20
  • Literature Summary
    5
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93961 NCBI Gene Model | MGI Sequence Detail 84059 C57BL/6J ±  kb
transcript NM_001358389 RefSeq | MGI Sequence Detail 5442 C57BL/6  
polypeptide Q9JI67 UniProt | EBI | MGI Sequence Detail 308 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 20
    Primer pair 4

    Microarray probesets 6
Other
Accession IDs
less
MGI:1916121, MGI:2146583
References
more
  • Summaries
    All 57
    Developmental Gene Expression 5
    Diseases 3
    Gene Ontology 4
    Phenotypes 27
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:262380 Watson-Scales S, et al., Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration. PLoS Genet. 2018 May;14(5):e1007383
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/20/2020
MGI 6.16 		The Jackson Laboratory