B3galt5
Gene Detail

Symbol

Name
ID

B3galt5
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
MGI:2136878

Synonyms

1190002B21Rik, b3Galt-V

Feature Type

protein coding gene

Genetic Map

Chromosome 16
56.88 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr16:96235801-96319859 bp, + strand From VEGA annotation of GRCm38   84059 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:13230  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 6 western clawed frog

Gene Tree: B3galt5

Human
homologs

Human Homolog		B3GALT5, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
NCBI Gene ID		10317
neXtProt AC		NX_Q9Y2C3
Human Synonyms		B3GalT-V, B3GalTx, B3T5, beta-1,3-GalTase 5, beta3Gal-T5, beta-3-Gx-T5, GLCT5
Human Chr (Location)		21q22.3; chr21:39556442-39662889 (+)  GRCh38

Mutations,
alleles, and
phenotypes

All mutations/alleles(3) : Targeted(3)
Genomic Mutations involving B3galt5 (2)
Incidental mutations (data from APF )
 

Homozygous mice for a targeted mutation appear normal.

 
Mutations Annotated to Human Diseases (1)   

Interactions

B3galt5 interacts with 332 markers (Mir7-1, Mir7-2, Mir7b, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (47 annotations)

Process	protein glycosylation
Component	endoplasmic reticulum, Golgi apparatus, ...
Function	1,2-dihydroxy-phenanthrene glycosyltransferase activity, 1-phenanthrol glycosyltransferase activity, ...

External Resources: FuncBase

Expression

Literature Summary: (5 records)

Data Summary: Results (250)    Tissues (183)    Images (20)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	142
In situ reporter (knock in)	45
Northern blot	7
RT-PCR	56

cDNA source data(18)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(22) cDNA(18) Primer pair(4)
Microarray probesets(6)

Other database
links

VEGA Gene Model	OTTMUSG00000020397 (Evidence)
Ensembl Gene Model	ENSMUSG00000074892 (Evidence)
Entrez Gene	93961 (Evidence)
UniGene	154783
DFCI	TC1600169, TC1599247
DoTS	DT.55156775, DT.50315391, DT.110714512, DT.94223197
NIA Mouse Gene Index	U017419
EC	2.4.1.-
Consensus CDS Project	CCDS28356.1
International Mouse Knockout Project Status	B3galt5

Sequences

Length	Strain/Species
genomic	OTTMUSG00000020397	VEGA Gene Model | MGI Sequence Detail	84059	C57BL/6J
transcript	OTTMUST00000048370	VEGA | MGI Sequence Detail	5282	Not Applicable
polypeptide	OTTMUSP00000022150	VEGA | MGI Sequence Detail	308	Not Applicable

All sequences(47) RefSeq(8) UniProt(1)

Polymorphisms

SNPs within 2kb(403 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR002659	Glycosyl transferase, family 31
Protein Ontology	PR:000004586	beta-1,3-galactosyltransferase 5

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(35)

Other
accession IDs

MGI:1916121, MGI:2146583