About   Help   FAQ
BC004004 Gene Detail
Summary
  • Symbol
    BC004004
  • Name
    cDNA sequence BC004004
  • Synonyms
    2400006G15Rik, MGC:7550
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136782
    NCBI Gene: 80748
  • Gene Overview
    MyGene.info: C6orf89
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:29268788-29302881 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 15.17 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    283 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136782
protein coding gene Chr17:29268788-29302887 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023461
protein coding gene Chr17:28783609-28823148 (+)
A/J MGP_AJ_G0023419
protein coding gene Chr17:27795977-27837361 (+)
AKR/J MGP_AKRJ_G0023384
protein coding gene Chr17:28028959-28065523 (+)
BALB/cJ MGP_BALBcJ_G0023424
protein coding gene Chr17:28063430-28098067 (+)
C3H/HeJ MGP_C3HHeJ_G0023185
protein coding gene Chr17:28414174-28456678 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023866
protein coding gene Chr17:29933040-29967837 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021341
protein coding gene Chr17:25125575-25161906 (+)
CAST/EiJ MGP_CASTEiJ_G0022686
protein coding gene Chr17:28394090-28432081 (+)
CBA/J MGP_CBAJ_G0023160
protein coding gene Chr17:31036460-31075454 (+)
DBA/2J MGP_DBA2J_G0023290
protein coding gene Chr17:27327015-27360703 (+)
FVB/NJ MGP_FVBNJ_G0023260
protein coding gene Chr17:27165435-27201613 (+)
LP/J MGP_LPJ_G0023368
protein coding gene Chr17:29035952-29075805 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023278
protein coding gene Chr17:30384853-30422895 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023908
protein coding gene Chr17:28495391-28533203 (+)
PWK/PhJ MGP_PWKPhJ_G0022436
protein coding gene Chr17:26167121-26204030 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022254
protein coding gene Chr17:26476568-26510399 (+)
WSB/EiJ MGP_WSBEiJ_G0022748
protein coding gene Chr17:28450030-28485288 (+)



Homology
more
  • Human Ortholog
    C6orf89, chromosome 6 open reading frame 89
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C6orf89, chromosome 6 open reading frame 89
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BRAP, PS1TP5TP1
  • Links
    NCBI Gene ID: 221477
    neXtProt AC: NX_Q6UWU4
    UniProt: Q6UWU4

  • Chr Location
    6p21.2; chr6:36834886-36928964 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotypic analysis of mice homozygous for a gene trap allele indicates this mutation has no notable phenotype in any parameter tested.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000052712 Ensembl Gene Model | MGI Sequence Detail 34094 C57BL/6J ±  kb
transcript ENSMUST00000120346 Ensembl | MGI Sequence Detail 1297 Not Applicable  
polypeptide ENSMUSP00000113315 Ensembl | MGI Sequence Detail 348 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR038757 Bombesin receptor-activated protein
Molecular
Reagents
less
  • All nucleic 97
    cDNA 97

    Microarray probesets 6
Other
Accession IDs
less
MGI:1916975
References
more
  • Summaries
    All 30
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/13/2018
MGI 6.13
The Jackson Laboratory