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Pcdhb19 Gene Detail
Summary
  • Symbol
    Pcdhb19
  • Name
    protocadherin beta 19
  • Synonyms
    Pcdhb11, PcdhbS
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136757
    NCBI Gene: 93890
  • Gene Overview
    MyGene.info: PCDHB12
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr18:37496998-37501711 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.51 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136757
protein coding gene Chr18:37496991-37504128 (.)
129S1/SvImJ MGP_129S1SvImJ_G0024327
protein coding gene Chr18:35883748-35893043 (+)
A/J MGP_AJ_G0024295
protein coding gene Chr18:34673143-34680286 (+)
AKR/J MGP_AKRJ_G0024263
protein coding gene Chr18:35622473-35629476 (+)
BALB/cJ MGP_BALBcJ_G0024294
protein coding gene Chr18:34717709-34724852 (+)
C3H/HeJ MGP_C3HHeJ_G0024060
protein coding gene Chr18:35691015-35698161 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024736
protein coding gene Chr18:37192378-37199746 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022175
protein coding gene Chr18:34718369-34725825 (+)
CAST/EiJ MGP_CASTEiJ_G0023536
protein coding gene Chr18:35651650-35659206 (+)
CBA/J MGP_CBAJ_G0024030
protein coding gene Chr18:38279515-38287112 (+)
DBA/2J MGP_DBA2J_G0024160
protein coding gene Chr18:34274370-34281519 (+)
FVB/NJ MGP_FVBNJ_G0024126
protein coding gene Chr18:33991585-33998710 (+)
LP/J MGP_LPJ_G0024244
protein coding gene Chr18:35979231-35986380 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024157
protein coding gene Chr18:39567032-39574706 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024785
protein coding gene Chr18:35485218-35492730 (+)
PWK/PhJ MGP_PWKPhJ_G0023280
protein coding gene Chr18:34500520-34507826 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023085
protein coding gene Chr18:35721072-35728173 (+)
WSB/EiJ MGP_WSBEiJ_G0023598
protein coding gene Chr18:35377670-35384810 (+)



Homology
more
  • Human Ortholog
    PCDHB12, protocadherin beta 12
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PCDHB12, protocadherin beta 12
    Orthology source: HomoloGene
  • Synonyms
    PCDH-BETA12
  • Links
    NCBI Gene ID: 56124
    neXtProt AC: NX_Q9Y5F1
    UniProt: Q9Y5F1

  • Chr Location
    5q31.3; chr5:141208719-141212126 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93890 NCBI Gene Model | MGI Sequence Detail 4714 C57BL/6J ±  kb
transcript NM_053144 RefSeq | MGI Sequence Detail 4714 C57BL/6  
polypeptide NP_444374 RefSeq | MGI Sequence Detail 801 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 20
    Developmental Gene Expression 3
    Gene Ontology 2
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:204566 Gendrel AV, et al., Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes. Mol Cell Biol. 2013 Aug;33(16):3150-65

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory