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Pcdhb18 Gene Detail
Summary
  • Symbol
    Pcdhb18
  • Name
    protocadherin beta 18
  • Synonyms
    Pcdhb9, PcdhbR
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136756
    NCBI Gene: 93889
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr18:37489465-37494503 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.50 cM, cytoband B3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    70 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136756
protein coding gene Chr18:37489465-37494505 (.)
129S1/SvImJ MGP_129S1SvImJ_G0024326
protein coding gene Chr18:35876222-35881262 (+)
A/J MGP_AJ_G0024294
protein coding gene Chr18:34665617-34670657 (+)
AKR/J MGP_AKRJ_G0024262
protein coding gene Chr18:35614947-35619987 (+)
BALB/cJ MGP_BALBcJ_G0024293
protein coding gene Chr18:34710183-34715223 (+)
C3H/HeJ MGP_C3HHeJ_G0024059
protein coding gene Chr18:35683489-35688529 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024735
protein coding gene Chr18:37184852-37189892 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022174
protein coding gene Chr18:34710795-34715832 (+)
CAST/EiJ MGP_CASTEiJ_G0023535
protein coding gene Chr18:35644107-35649159 (+)
CBA/J MGP_CBAJ_G0024029
protein coding gene Chr18:38271989-38277029 (+)
DBA/2J MGP_DBA2J_G0024159
protein coding gene Chr18:34266844-34271884 (+)
FVB/NJ MGP_FVBNJ_G0024125
protein coding gene Chr18:33984059-33989099 (+)
LP/J MGP_LPJ_G0024243
protein coding gene Chr18:35971705-35976745 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024156
protein coding gene Chr18:39558465-39563302 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024784
protein coding gene Chr18:35477692-35482732 (+)
PWK/PhJ MGP_PWKPhJ_G0023279
protein coding gene Chr18:34492989-34498029 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023084
protein coding gene Chr18:35713568-35718595 (+)
WSB/EiJ MGP_WSBEiJ_G0023597
protein coding gene Chr18:35370101-35375141 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93889 NCBI Gene Model | MGI Sequence Detail 5039 C57BL/6J ±  kb
transcript NM_053143 RefSeq | MGI Sequence Detail 5039 C57BL/6  
polypeptide Q91Y02 UniProt | EBI | MGI Sequence Detail 792 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Gene Ontology 4
    Phenotypes 2
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory