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Pcdhb17 Gene Detail
Summary
  • Symbol
    Pcdhb17
  • Name
    protocadherin beta 17
  • Synonyms
    mKIAA1621, Pcdhb16, PcdhbQ
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136754
    NCBI Gene: 93888
  • Gene Overview
    MyGene.info: PCDHB16
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37485021-37488290 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.50 cM, cytoband B3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    51 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136754
protein coding gene Chr18:37484795-37489454 (.)
129S1/SvImJ MGP_129S1SvImJ_G0024325
protein coding gene Chr18:35871551-35876211 (+)
A/J MGP_AJ_G0024293
protein coding gene Chr18:34660946-34665606 (+)
AKR/J MGP_AKRJ_G0024261
protein coding gene Chr18:35610276-35614936 (+)
BALB/cJ MGP_BALBcJ_G0024292
protein coding gene Chr18:34705512-34710172 (+)
C3H/HeJ MGP_C3HHeJ_G0024058
protein coding gene Chr18:35678823-35683483 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024734
protein coding gene Chr18:37180145-37184804 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022173
protein coding gene Chr18:34706119-34710785 (+)
CAST/EiJ MGP_CASTEiJ_G0023534
protein coding gene Chr18:35639437-35644094 (+)
CBA/J MGP_CBAJ_G0024028
protein coding gene Chr18:38267318-38271978 (+)
DBA/2J MGP_DBA2J_G0024158
protein coding gene Chr18:34262173-34266833 (+)
FVB/NJ MGP_FVBNJ_G0024124
protein coding gene Chr18:33979388-33984048 (+)
LP/J MGP_LPJ_G0024242
protein coding gene Chr18:35967034-35971694 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024155
protein coding gene Chr18:39552416-39558426 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024783
protein coding gene Chr18:35473020-35477680 (+)
PWK/PhJ MGP_PWKPhJ_G0023278
protein coding gene Chr18:34488285-34492979 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023083
protein coding gene Chr18:35708901-35713560 (+)
WSB/EiJ MGP_WSBEiJ_G0023596
protein coding gene Chr18:35365422-35370089 (+)



Homology
more
  • Human Ortholog
    PCDHB16, protocadherin beta 16
  • Vertebrate Orthologs
    6
  • Human Ortholog
    PCDHB16, protocadherin beta 16
    Orthology source: HomoloGene
  • Synonyms
    ME1, PCDH3X, PCDHB8a, PCDH-BETA16
  • Links
    NCBI Gene ID: 57717
    neXtProt AC: NX_Q9NRJ7
    UniProt: Q9NRJ7

  • Chr Location
    5q31.3; chr5:141181690-141186221 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93888 NCBI Gene Model | MGI Sequence Detail 3270 C57BL/6J ±  kb
transcript NM_053142 RefSeq | MGI Sequence Detail 3284 Not Specified  
polypeptide NP_444372 RefSeq | MGI Sequence Detail 799 Not Specified  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 4
References
more
  • Summaries
    All 25
    Developmental Gene Expression 5
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:225216 Alvarez-Saavedra M, et al., Snf2h-mediated chromatin organization and histone H1 dynamics govern cerebellar morphogenesis and neural maturation. Nat Commun. 2014;5:4181

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory