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H1f9 Gene Detail
Summary
  • Symbol
    H1f9
  • Name
    H1.9 linker histone
  • Synonyms
    Hils1, TISP64
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136691
    NCBI Gene: 54388
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:94858419-94859282 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 59.01 cM, cytoband C
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136691
 protein coding gene Chr11:94858419-94859282 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018972
 protein coding gene Chr11:97150742-97151605 (+)
A/J MGP_AJ_G0018940
 protein coding gene Chr11:93226660-93227514 (+)
AKR/J MGP_AKRJ_G0018910
 protein coding gene Chr11:96108724-96109578 (+)
BALB/cJ MGP_BALBcJ_G0018913
 protein coding gene Chr11:93698382-93699245 (+)
C3H/HeJ MGP_C3HHeJ_G0018727
 protein coding gene Chr11:96238488-96239342 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019365
 protein coding gene Chr11:100216103-100216966 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016996
 protein coding gene Chr11:90712711-90713568 (+)
CAST/EiJ MGP_CASTEiJ_G0018281
 protein coding gene Chr11:97022145-97023008 (+)
CBA/J MGP_CBAJ_G0018698
 protein coding gene Chr11:104301263-104302117 (+)
DBA/2J MGP_DBA2J_G0018806
 protein coding gene Chr11:92802386-92803249 (+)
FVB/NJ MGP_FVBNJ_G0018795
 protein coding gene Chr11:92263864-92264727 (+)
LP/J MGP_LPJ_G0018876
 protein coding gene Chr11:97712558-97713421 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018822
 protein coding gene Chr11:104361324-104362187 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019405
 protein coding gene Chr11:96365989-96366852 (+)
PWK/PhJ MGP_PWKPhJ_G0018052
 protein coding gene Chr11:93709010-93709864 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017841
 protein coding gene Chr11:96052306-96053169 (+)
WSB/EiJ MGP_WSBEiJ_G0018330
 protein coding gene Chr11:96292054-96292917 (+)



Homology
more
  • Human Ortholog
    H1-9P, H1.9 linker histone, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H1-9P, H1.9 linker histone, pseudogene
  • Synonyms
    H1-9, H1.9, HILS1
  • Links
    NCBI Gene ID: 373861
    UniProt: P60008

  • Chr Location
    17q21.33; chr17:50171428-50172476 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    32
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 54388 NCBI Gene Model | MGI Sequence Detail 864 C57BL/6J ±  kb
transcript NM_018792 RefSeq | MGI Sequence Detail 864 C57BL/6  
polypeptide Q9QYL0 UniProt | EBI | MGI Sequence Detail 170 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR005818 Linker histone H1/H5, domain H15
    IPR036390 Winged helix DNA-binding domain superfamily
    IPR036388 Winged helix-like DNA-binding domain superfamily
Molecular
Reagents
less
  • All nucleic 34
    Genomic 2
    cDNA 32

    Microarray probesets 3
References
more
  • Summaries
    All 37
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:49992 Duclos F, et al., Progressive muscular dystrophy in alpha-sarcoglycan-deficient mice. J Cell Biol. 1998 Sep 21;142(6):1461-71
  • Latest
    J:250931 Pan C, et al., Role of H1 linker histones in mammalian development and stem cell differentiation. Biochim Biophys Acta. 2016 Mar;1859(3):496-509
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory