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Clec2i Gene Detail
Summary
  • Symbol
    Clec2i
  • Name
    C-type lectin domain family 2, member i
  • Synonyms
    Clrg, Clr-g, Dcl1, OCILrP2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136650
    NCBI Gene: 93675
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:128887588-128898167 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 63.10 cM, cytoband F3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    87 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136650
protein coding gene Chr6:128887573-128898167 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0031774
protein coding gene Chr6:136016388-136028185 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028920
protein coding gene Chr6:124778389-124789336 (+)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0031106
protein coding gene Chr6:125297611-125307878 (+)
LP/J MGP_LPJ_G0031231
protein coding gene Chr6:132435636-132437598 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031144
protein coding gene Chr6:145157355-145168136 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031808
protein coding gene Chr6:131092157-131097994 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0029964
protein coding gene Chr6:129103370-129117923 (+)
WSB/EiJ MGP_WSBEiJ_G0030505
protein coding gene Chr6:131365967-131377305 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030365 Ensembl Gene Model | MGI Sequence Detail 10580 C57BL/6J ±  kb
transcript ENSMUST00000162666 Ensembl | MGI Sequence Detail 1091 Not Applicable  
polypeptide ENSMUSP00000124910 Ensembl | MGI Sequence Detail 246 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 27
    Gene Ontology 7
    Phenotypes 3
  • Earliest
    J:69859 Plougastel B, et al., Cloning of Clr, a new family of lectin-like genes localized between mouse Nkrp1a and Cd69. Immunogenetics. 2001 Apr;53(3):209-14
  • Latest
    J:190698 Skalova T, et al., Mouse Clr-g, a ligand for NK cell activation receptor NKR-P1F: crystal structure and biophysical properties. J Immunol. 2012 Nov 15;189(10):4881-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory