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Echs1 Gene Detail
Summary
  • Symbol
    Echs1
  • Name
    enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136460
    NCBI Gene: 93747
  • Gene Overview
    MyGene.info: ECHS1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:140105723-140116423 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 85.12 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    66 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136460
protein coding gene Chr7:140105710-140116476 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033164
protein coding gene Chr7:145193460-145207060 (-)
A/J MGP_AJ_G0033146
protein coding gene Chr7:141055102-141065601 (-)
AKR/J MGP_AKRJ_G0033078
protein coding gene Chr7:144896823-144914740 (-)
BALB/cJ MGP_BALBcJ_G0033147
protein coding gene Chr7:140788390-140798778 (-)
C3H/HeJ MGP_C3HHeJ_G0032861
protein coding gene Chr7:144700879-144715536 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033658
protein coding gene Chr7:150525844-150536333 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030631
protein coding gene Chr7:142176443-142186998 (-)
CAST/EiJ MGP_CASTEiJ_G0032191
protein coding gene Chr7:137003897-137015288 (-)
CBA/J MGP_CBAJ_G0032834
protein coding gene Chr7:155598887-155609484 (-)
DBA/2J MGP_DBA2J_G0032986
protein coding gene Chr7:139017694-139028938 (-)
FVB/NJ MGP_FVBNJ_G0032939
protein coding gene Chr7:138911959-138923599 (-)
LP/J MGP_LPJ_G0033080
protein coding gene Chr7:146725328-146743517 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032971
protein coding gene Chr7:156263901-156276425 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033678
protein coding gene Chr7:143901347-143913073 (-)
PWK/PhJ MGP_PWKPhJ_G0031897
protein coding gene Chr7:132201259-132212691 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031742
protein coding gene Chr7:130734230-130745608 (-)
WSB/EiJ MGP_WSBEiJ_G0032302
protein coding gene Chr7:144794859-144805084 (-)



Homology
more
  • Human Ortholog
    ECHS1, enoyl-CoA hydratase, short chain 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ECHS1, enoyl-CoA hydratase, short chain 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ECHS1D, SCEH
  • Links
    NCBI Gene ID: 1892
    neXtProt AC: NX_P30084
    UniProt: P30084

  • Chr Location
    10q26.3; chr10:133362483-133373404 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 93747 NCBI Gene Model | MGI Sequence Detail 10701 C57BL/6J ±  kb
transcript NM_053119 RefSeq | MGI Sequence Detail 1530 C57BL/6  
polypeptide Q8BH95 UniProt | EBI | MGI Sequence Detail 290 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 181
    cDNA 180
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2142345
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Gene Ontology 8
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory