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Pabpc5 Gene Detail
Summary
  • Symbol
    Pabpc5
  • Name
    poly(A) binding protein, cytoplasmic 5
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136401
    NCBI Gene: 93728
  • Alliance
Location &
Maps
more
  • Sequence Map
    ChrX:119927196-119930165 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 49.58 cM, cytoband D
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    45 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136401
protein coding gene ChrX:119927196-119930165 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036044
protein coding gene ChrX:116789949-116793452 (+)
A/J MGP_AJ_G0036025
protein coding gene ChrX:116411552-116414529 (+)
AKR/J MGP_AKRJ_G0035943
protein coding gene ChrX:120201761-120204730 (+)
BALB/cJ MGP_BALBcJ_G0036017
protein coding gene ChrX:114877052-114880096 (+)
C3H/HeJ MGP_C3HHeJ_G0035723
protein coding gene ChrX:117042777-117046516 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036541
protein coding gene ChrX:120287900-120291032 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033367
protein coding gene ChrX:112601178-112604179 (+)
CAST/EiJ MGP_CASTEiJ_G0035010
protein coding gene ChrX:100814066-100817036 (+)
CBA/J MGP_CBAJ_G0035698
protein coding gene ChrX:124054484-124058782 (+)
DBA/2J MGP_DBA2J_G0035849
protein coding gene ChrX:115754877-115757812 (+)
FVB/NJ MGP_FVBNJ_G0035793
protein coding gene ChrX:115074836-115077806 (+)
LP/J MGP_LPJ_G0035943
protein coding gene ChrX:117666540-117669509 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035822
protein coding gene ChrX:130132625-130135594 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036568
protein coding gene ChrX:116289052-116291813 (+)
PWK/PhJ MGP_PWKPhJ_G0034702
protein coding gene ChrX:98118630-98121525 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034533
protein coding gene ChrX:101566970-101569953 (+)
WSB/EiJ MGP_WSBEiJ_G0035146
protein coding gene ChrX:114941771-114945836 (+)



Homology
more
  • Human Ortholog
    PABPC5, poly(A) binding protein cytoplasmic 5
  • Vertebrate Orthologs
    7
  • Human Ortholog
    PABPC5, poly(A) binding protein cytoplasmic 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PABP5
  • Links
    NCBI Gene ID: 140886
    neXtProt AC: NX_Q96DU9
    UniProt: Q96DU9

  • Chr Location
    Xq21.31; chrX:91434598-91438584 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 93728 NCBI Gene Model | MGI Sequence Detail 2970 C57BL/6J ±  kb
transcript NM_053114 RefSeq | MGI Sequence Detail 2434 C57BL/6  
polypeptide NP_444344 RefSeq | MGI Sequence Detail 381 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
    IPR003954 RNA recognition motif domain, eukaryote
Molecular
Reagents
less
  • All nucleic 8
    cDNA 6
    Primer pair 2

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:69922 Blanco P, et al., A Novel Poly(A)-Binding Protein Gene (PABPC5) Maps to an X-Specific Subinterval in the Xq21.3/Yp11.2 Homology Block of the Human Sex Chromosomes. Genomics. 2001 May 15;74(1):1-11
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory