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Clec2d
Gene Detail
Symbol

Name
ID
Clec2d
C-type lectin domain family 2, member d
MGI:2135589
Synonyms
Clrb, Clr-b, Ocil
Feature Type
protein coding gene
Genetic Map
Chromosome 6
63.16 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:129180615-129186534 bp, + strand
From VEGA annotation of GRCm38

  5920 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:136309  Vertebrate Homology Class
3 mouse

Protein SuperFamily: early activation antigen CD69
Gene Tree: Clec2d

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Enhanced osteoclastic activity in the bone of homozygous null mice leads to osteopenia and high serum calcium levels.
 
Interactions
Clec2d interacts with 84 markers (Mir29a, Mir29b-1, Mir29b-2, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (4 records)
Data Summary: Results (75)    Tissues (35)    Images (3)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 34
RNA in situ 33
Northern blot 8
cDNA source data(16)
Other mouse links: GEO   Expression Atlas
Molecular
reagents
All nucleic(17) cDNA(16) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000029144 (Evidence)
Ensembl Gene Model ENSMUSG00000030157 (Evidence)
Entrez Gene 93694 (Evidence)
UniGene 197536
DFCI TC1585351
DoTS DT.489636
Consensus CDS Project CCDS20581.1
International Mouse Phenotyping Consortium Status Clec2d
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029144 VEGA Gene Model | MGI Sequence Detail 5920 C57BL/6J ±  kb
transcript OTTMUST00000072287 VEGA | MGI Sequence Detail 1213 Not Applicable 
polypeptide OTTMUSP00000037157 VEGA | MGI Sequence Detail 207 Not Applicable 

For the selected sequences
All sequences(25) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(44 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001304 C-type lectin
InterPro IPR016187 C-type lectin fold
InterPro IPR016186 C-type lectin-like
Protein Ontology PR:000005566 C-type lectin domain family 2 member D
References
(Earliest) J:69269 Zhou H, et al., A novel osteoblast-derived C-type lectin that inhibits osteoclast formation. J Biol Chem. 2001 May 4;276(18):14916-23
(Latest) J:209833 Kim J, et al., Peg3 mutational effects on reproduction and placenta-specific gene families. PLoS One. 2013;8(12):e83359
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory