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Tra2a Gene Detail
Summary
  • Symbol
    Tra2a
  • Name
    transformer 2 alpha homolog (Drosophila)
  • Synonyms
    1500010G04Rik, G430041M01Rik, mAWMS1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933972
    NCBI Gene: 101214
  • Gene Overview
    MyGene.info: TRA2A
Location & Maps
more
  • Sequence Map
    Chr6:49243924-49264033 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      20110 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 23.84 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TRA2A, transformer 2 alpha homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRA2A, transformer 2 alpha homolog
    Orthology source: HGNC, HomoloGene
  • Synonyms
    AWMS1, HSU53209
  • Links
    NCBI Gene ID: 29896
    neXtProt AC: NX_Q13595

  • Chr Location
    7p15.3; chr7:23504780-23532041 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 40866
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: TRA2A
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    36
  • Gene trapped
    33
  • Targeted
    3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000057408 VEGA Gene Model | MGI Sequence Detail 20110 C57BL/6J ±  kb
transcript OTTMUST00000141224 VEGA | MGI Sequence Detail 1799 Not Applicable  
polypeptide OTTMUSP00000073835 VEGA | MGI Sequence Detail 282 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    134 from dbSNP Build 142
Protein
Information
less
  • UniProt
    9 Sequences
  • Protein Ontology
    PR:000016599 transformer-2 protein homolog alpha
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain
    IPR000504 RNA recognition motif domain
Molecular
Reagents
less
  • All nucleic 19
    cDNA 18
    Primer pair 1

    Microarray probesets 9
Other
Accession IDs
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MGI:1916215, MGI:2141532
References
more
  • Summaries
    All 37
    Developmental Gene Expression 4
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:213437 Storbeck M, et al., Neuronal-specific deficiency of the splicing factor Tra2b causes apoptosis in neurogenic areas of the developing mouse brain. PLoS One. 2014;9(2):e89020

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory