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Tra2a Gene Detail
Summary
  • Symbol
    Tra2a
  • Name
    transformer 2 alpha
  • Synonyms
    1500010G04Rik, G430041M01Rik, mAWMS1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933972
    NCBI Gene: 101214
  • Gene Overview
    MyGene.info: TRA2A
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:49243924-49264033 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 23.84 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    134 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933972
protein coding gene Chr6:49243921-49264248 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030722
protein coding gene Chr6:48244281-48264318 (-)
A/J MGP_AJ_G0030693
protein coding gene Chr6:46041590-46061982 (-)
AKR/J MGP_AKRJ_G0030618
protein coding gene Chr6:47665275-47687403 (-)
BALB/cJ MGP_BALBcJ_G0030703
protein coding gene Chr6:46389387-46409359 (-)
C3H/HeJ MGP_C3HHeJ_G0030416
protein coding gene Chr6:47673854-47698497 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031158
protein coding gene Chr6:49377201-49410259 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028365
protein coding gene Chr6:43643041-43662896 (-)
CAST/EiJ MGP_CASTEiJ_G0029820
protein coding gene Chr6:47388389-47408449 (-)
CBA/J MGP_CBAJ_G0030391
protein coding gene Chr6:51424867-51450869 (-)
DBA/2J MGP_DBA2J_G0030540
protein coding gene Chr6:45952540-45972513 (-)
FVB/NJ MGP_FVBNJ_G0030492
protein coding gene Chr6:45596548-45616474 (-)
LP/J MGP_LPJ_G0030625
protein coding gene Chr6:48221831-48244635 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030526
protein coding gene Chr6:54186432-54208346 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031187
protein coding gene Chr6:47528732-47551257 (-)
PWK/PhJ MGP_PWKPhJ_G0029532
protein coding gene Chr6:45502267-45523054 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029368
protein coding gene Chr6:46879661-46899594 (-)
WSB/EiJ MGP_WSBEiJ_G0029897
protein coding gene Chr6:47526561-47546636 (-)



Homology
more
  • Human Ortholog
    TRA2A, transformer 2 alpha homolog
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRA2A, transformer 2 alpha homolog
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AWMS1, HSU53209
  • Links
    NCBI Gene ID: 29896
    neXtProt AC: NX_Q13595
    UniProt: Q13595

  • Chr Location
    7p15.3; chr7:23504780-23532041 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 40866
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TRA2A
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029817 Ensembl Gene Model | MGI Sequence Detail 20110 C57BL/6J ±  kb
transcript ENSMUST00000031841 Ensembl | MGI Sequence Detail 1799 Not Applicable  
polypeptide ENSMUSP00000031841 Ensembl | MGI Sequence Detail 282 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    9 Sequences
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
Molecular
Reagents
less
  • All nucleic 21
    Genomic 1
    cDNA 19
    Primer pair 1

    Microarray probesets 9
Other
Accession IDs
less
MGI:1916215, MGI:2141532
References
more
  • Summaries
    All 39
    Developmental Gene Expression 5
    Gene Ontology 8
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:256883 Zhou J, et al., Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system. Biochim Biophys Acta. 2017 Dec;1860(12):1159-1168

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory