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Smarcd1 Gene Detail
Summary
  • Symbol
    Smarcd1
  • Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
  • Synonyms
    Baf60a, D15Kz1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933623
    NCBI Gene: 83797
  • Gene Overview
    MyGene.info: SMARCD1
Location & Maps
more
  • Sequence Map
    Chr15:99702287-99713995 bp, + strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      11709 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.13 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAF60A, CRACD1, Rsc6p
  • Links
    NCBI Gene ID: 6602
    neXtProt AC: NX_Q96GM5

  • Chr Location
    12q13-q14; chr12:50085200-50100711 (+)  GRCh38.p2
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
  • All Mutations and Alleles
    19
  • Chemically induced (other)
    1
  • Gene trapped
    16
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Smarcd1
  • Incidental Mutations
    Mutagenetix , APF , CvDC
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    132
  • Tissues
    83
  • cDNA Data
    106
  • Literature Summary
    11
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 83797 NCBI Gene Model | MGI Sequence Detail 11709 C57BL/6J ±  kb
transcript NM_031842 RefSeq | MGI Sequence Detail 3153 C57BL/6  
polypeptide Q61466 UniProt | EBI | MGI Sequence Detail 515 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    70 from dbSNP Build 142
  • RFLP
    1
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000015265 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
  • PDB
    1UHR
  • InterPro Domains
    IPR019835 SWIB domain
    IPR003121 SWIB/MDM2 domain
Molecular
Reagents
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  • All nucleic 111
    Genomic 3
    cDNA 107
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-4023, MGI:2145894, MGI:90224
References
more
  • Summaries
    All 44
    Developmental Gene Expression 11
    Diseases 1
    Gene Ontology 10
    Phenotypes 21
  • Earliest
    J:14228 Kozak LP, et al., Molecular characterization of a novel gene upstream from the glycerol-3-phosphate dehydrogenase gene in mouse. Mouse News Lett. 1988;82:127
  • Latest
    J:231971 Nguyen H, et al., Epigenetic regulation by BAF (mSWI/SNF) chromatin remodeling complexes is indispensable for embryonic development. Cell Cycle. 2016 May 18;15(10):1317-24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/20/2016
MGI 6.05 		The Jackson Laboratory