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Slc12a9
Gene Detail
Symbol

Name
ID
Slc12a9
solute carrier family 12 (potassium/chloride transporters), member 9
MGI:1933532
Synonyms
CIP1
Feature Type
protein coding gene
Genetic Map
Chromosome 5
76.35 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr5:137314558-137333597 bp, - strand
From VEGA annotation of GRCm38

  19040 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5429  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC12A9
Gene Tree: Slc12a9

Human
homologs
SLC12A9, solute carrier family 12, member 9
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 56996
neXtProt AC: NX_Q9BXP2

Human Synonyms: CCC6, CIP1, hCCC6, WO3.3

Human Chr (Location): 7q22; chr7:100834036-100867012 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(3) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc12a9 interacts with 77 markers (Mir7b, Mir92-2, Mir98, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process transmembrane transport, transport
Component extracellular exosome, integral component of membrane, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Images (8)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(40)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc12a9 ; ZFIN slc12a9    NEW 
Molecular
reagents
All nucleic(40) cDNA(40)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000021935 (Evidence)
Ensembl Gene Model ENSMUSG00000037344 (Evidence)
Entrez Gene 83704 (Evidence)
UniGene 235625
DFCI TC1578635, TC1613281
DoTS DT.40134830, DT.91443173
NIA Mouse Gene Index U026843
Consensus CDS Project CCDS19766.1
International Mouse Phenotyping Consortium Status Slc12a9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021935 VEGA Gene Model | MGI Sequence Detail 19040 C57BL/6J ±  kb
transcript OTTMUST00000052067 VEGA | MGI Sequence Detail 3330 Not Applicable 
polypeptide OTTMUSP00000024609 VEGA | MGI Sequence Detail 914 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(6) UniProt(2)
Polymorphisms
SNPs within 2kb(40 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004841 Amino acid permease/ SLC12A domain
InterPro IPR030345 Solute carrier family 12 member 9
Protein Ontology PR:000014932 solute carrier family 12 member 9
References
(Earliest) J:67990 Wilson MD, et al., Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5. Nucleic Acids Res. 2001 Mar 15;29(6):1352-65
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory