About   Help   FAQ
Trim23 Gene Detail
Summary
  • Symbol
    Trim23
  • Name
    tripartite motif-containing 23
  • Synonyms
    6330516O20Rik, Arfd1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933161
    NCBI Gene: 81003
  • Gene Overview
    MyGene.info: TRIM23
Location & Maps
more
  • Sequence Map
    Chr13:104178797-104203372 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      24576 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 56.35 cM, cytoband D1
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    TRIM23, tripartite motif containing 23
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TRIM23, tripartite motif containing 23
    Orthology source: HomoloGene
  • Synonyms
    ARD1, ARFD1, RNF46
  • Links
    NCBI Gene ID: 373
    neXtProt AC: NX_P36406

  • Chr Location
    5q12.3; chr5:65589680-65624360 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 1251
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: TRIM23
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    21
  • Gene trapped
    19
  • Targeted
    2
  • Incidental Mutations
Mice homozygous for a gene trapped allele exhibit mild myopathy with sarcotubular myopathy, decreased fertility, and decreased axon diameter.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035058 VEGA Gene Model | MGI Sequence Detail 24576 C57BL/6J ±  kb
transcript OTTMUST00000089169 VEGA | MGI Sequence Detail 3416 Not Applicable  
polypeptide OTTMUSP00000048693 VEGA | MGI Sequence Detail 574 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    213 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 7
Other
Accession IDs
less
MGI:1923425, MGI:2145241
References
more
  • Summaries
    All 35
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/22/2016
MGI 6.04
The Jackson Laboratory