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Smim12 Gene Detail
Summary
  • Symbol
    Smim12
  • Name
    small integral membrane protein 12
  • Synonyms
    BC003266, MGC:7764
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933141
    NCBI Gene: 80284
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:127243784-127247809 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 61.41 cM, cytoband D2.2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933141
protein coding gene Chr4:127243784-127247809 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028795
protein coding gene Chr4:128986567-128990586 (+)
A/J MGP_AJ_G0028754
protein coding gene Chr4:123902179-123906196 (+)
AKR/J MGP_AKRJ_G0028707
protein coding gene Chr4:127309783-127313804 (+)
BALB/cJ MGP_BALBcJ_G0028777
protein coding gene Chr4:124466657-124470674 (+)
C3H/HeJ MGP_C3HHeJ_G0028491
protein coding gene Chr4:127379622-127383639 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029219
protein coding gene Chr4:133896118-133900129 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026492
protein coding gene Chr4:117020660-117024705 (+)
CAST/EiJ MGP_CASTEiJ_G0027924
protein coding gene Chr4:125504434-125508486 (+)
CBA/J MGP_CBAJ_G0028457
protein coding gene Chr4:137167171-137171188 (+)
DBA/2J MGP_DBA2J_G0028606
protein coding gene Chr4:124342699-124346716 (+)
FVB/NJ MGP_FVBNJ_G0028573
protein coding gene Chr4:123003995-123008480 (+)
LP/J MGP_LPJ_G0028707
protein coding gene Chr4:129277194-129281203 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028599
protein coding gene Chr4:142145927-142149929 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029257
protein coding gene Chr4:127681733-127685748 (+)
PWK/PhJ MGP_PWKPhJ_G0027645
protein coding gene Chr4:120853702-120857727 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027472
protein coding gene Chr4:123496952-123500944 (+)
WSB/EiJ MGP_WSBEiJ_G0028004
protein coding gene Chr4:127788794-127792807 (+)



Homology
more
  • Human Ortholog
    SMIM12, small integral membrane protein 12
  • Vertebrate Orthologs
    11
  • Human Ortholog
    SMIM12, small integral membrane protein 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C1orf212
  • Links
    NCBI Gene ID: 113444
    neXtProt AC: NX_Q96EX1
    UniProt: Q96EX1

  • Chr Location
    1p34.3; chr1:34850362-34859820 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 87074
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;2 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SMIM12
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    11
  • Chemically induced (other)
    2
  • Gene trapped
    5
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Smim12
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 80284 NCBI Gene Model | MGI Sequence Detail 4026 C57BL/6J ±  kb
transcript NM_030252 RefSeq | MGI Sequence Detail 1037 C57BL/6  
polypeptide Q78RX3 UniProt | EBI | MGI Sequence Detail 92 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR031933 UPF0767 family
Molecular
Reagents
less
  • All nucleic 32
    cDNA 32

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory