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Smim12 Gene Detail
Summary
  • Symbol
    Smim12
  • Name
    small integral membrane protein 12
  • Synonyms
    BC003266, MGC:7764
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933141
    NCBI Gene: 80284
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:127137577-127141602 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 61.41 cM, cytoband D2.2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    32 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933141
protein coding gene Chr4:127137577-127141602 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028795
protein coding gene Chr4:128986567-128990586 (+)
A/J MGP_AJ_G0028754
protein coding gene Chr4:123902179-123906196 (+)
AKR/J MGP_AKRJ_G0028707
protein coding gene Chr4:127309783-127313804 (+)
BALB/cJ MGP_BALBcJ_G0028777
protein coding gene Chr4:124466657-124470674 (+)
C3H/HeJ MGP_C3HHeJ_G0028491
protein coding gene Chr4:127379622-127383639 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029219
protein coding gene Chr4:133896118-133900129 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026492
protein coding gene Chr4:117020660-117024705 (+)
CAST/EiJ MGP_CASTEiJ_G0027924
protein coding gene Chr4:125504434-125508486 (+)
CBA/J MGP_CBAJ_G0028457
protein coding gene Chr4:137167171-137171188 (+)
DBA/2J MGP_DBA2J_G0028606
protein coding gene Chr4:124342699-124346716 (+)
FVB/NJ MGP_FVBNJ_G0028573
protein coding gene Chr4:123003995-123008480 (+)
LP/J MGP_LPJ_G0028707
protein coding gene Chr4:129277194-129281203 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028599
protein coding gene Chr4:142145927-142149929 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029257
protein coding gene Chr4:127681733-127685748 (+)
PWK/PhJ MGP_PWKPhJ_G0027645
protein coding gene Chr4:120853702-120857727 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027472
protein coding gene Chr4:123496952-123500944 (+)
WSB/EiJ MGP_WSBEiJ_G0028004
protein coding gene Chr4:127788794-127792807 (+)



Homology
more
  • Human Ortholog
    SMIM12, small integral membrane protein 12
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM12, small integral membrane protein 12
  • Synonyms
    C1orf212
  • Links
    NCBI Gene ID: 113444
    neXtProt AC: NX_Q96EX1
    UniProt: Q96EX1

  • Chr Location
    1p34.3; chr1:34850362-34859820 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    2
  • Gene trapped
    4
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Smim12
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 80284 NCBI Gene Model | MGI Sequence Detail 4026 C57BL/6J ±  kb
transcript NM_030252 RefSeq | MGI Sequence Detail 1037 C57BL/6  
polypeptide Q78RX3 UniProt | EBI | MGI Sequence Detail 92 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR031933 UPF0767 family
Molecular
Reagents
less
  • All nucleic 32
    cDNA 32

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/14/2021
MGI 6.17
The Jackson Laboratory