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Kcnip4 Gene Detail
Summary
  • Symbol
    Kcnip4
  • Name
    Kv channel interacting protein 4
  • Synonyms
    Calp250, KChIP4a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933131
    NCBI Gene: 80334
  • Gene Overview
    MyGene.info: KCNIP4
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:48389503-49524904 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 26.26 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    9677 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933131
protein coding gene Chr5:48389502-49524907 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029540
protein coding gene Chr5:47191825-48387836 (-)
A/J MGP_AJ_G0029508
protein coding gene Chr5:45572589-46698333 (-)
AKR/J MGP_AKRJ_G0029456
protein coding gene Chr5:47120430-48297213 (-)
BALB/cJ MGP_BALBcJ_G0029517
protein coding gene Chr5:46063963-47203014 (-)
C3H/HeJ MGP_C3HHeJ_G0029240
protein coding gene Chr5:47287561-48457210 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029971
protein coding gene Chr5:49306888-50478270 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027210
protein coding gene Chr5:42513151-43611374 (-)
CAST/EiJ MGP_CASTEiJ_G0028648
protein coding gene Chr5:46255493-47435377 (-)
CBA/J MGP_CBAJ_G0029209
protein coding gene Chr5:50720707-51988272 (-)
DBA/2J MGP_DBA2J_G0029355
protein coding gene Chr5:45645353-46777982 (-)
FVB/NJ MGP_FVBNJ_G0029315
protein coding gene Chr5:45021542-46149591 (-)
LP/J MGP_LPJ_G0029440
protein coding gene Chr5:47657036-48833986 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029343
protein coding gene Chr5:51753494-53051120 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030004
protein coding gene Chr5:46662969-47831516 (-)
PWK/PhJ MGP_PWKPhJ_G0028372
protein coding gene Chr5:44727697-45850392 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028206
protein coding gene Chr5:46024566-47223712 (-)
WSB/EiJ MGP_WSBEiJ_G0028729
protein coding gene Chr5:46721139-47886729 (-)



Homology
more
  • Human Ortholog
    KCNIP4, potassium voltage-gated channel interacting protein 4
  • Vertebrate Orthologs
    8
  • Human Ortholog
    KCNIP4, potassium voltage-gated channel interacting protein 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CALP, KCHIP4
  • Links
    NCBI Gene ID: 80333
    neXtProt AC: NX_Q6PIL6
    UniProt: Q6PIL6

  • Chr Location
    4p15.31-p15.2; chr4:20728520-21948801 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 80334 NCBI Gene Model | MGI Sequence Detail 1135402 C57BL/6J ±  kb
transcript NM_001199244 RefSeq | MGI Sequence Detail 2403 C57BL/6  
polypeptide Q6PHZ8 UniProt | EBI | MGI Sequence Detail 250 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 15
    Primer pair 4

    Microarray probesets 5
Other
Accession IDs
less
MGI:2141108
References
more
  • Summaries
    All 53
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 6
    Phenotypes 23
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:198284 Himes BE, et al., Integration of mouse and human genome-wide association data identifies KCNIP4 as an asthma gene. PLoS One. 2013;8(2):e56179

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory