About   Help   FAQ
Apobec3 Gene Detail
Summary
  • Symbol
    Apobec3
  • Name
    apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
  • Synonyms
    CEM15, Gm20117, MGC:7002, Rfv3, Rfv-3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933111
    NCBI Gene: 80287
  • Gene Overview
    MyGene.info: APOBEC3B
  • Alliance
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:79891659-79915906 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 37.85 cM, cytoband E2
  • Mapping Data
    9 experiments
Strain
Comparison
more
  • SNPs within 2kb
    436 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933111
protein coding gene Chr15:79891659-79918218 (.)
129S1/SvImJ MGP_129S1SvImJ_G0022089
protein coding gene Chr15:80190522-80214822 (+)
A/J MGP_AJ_G0022050
protein coding gene Chr15:77417955-77444759 (+)
AKR/J MGP_AKRJ_G0022025
protein coding gene Chr15:79573943-79596914 (+)
BALB/cJ MGP_BALBcJ_G0022056
protein coding gene Chr15:77425435-77448761 (+)
C3H/HeJ MGP_C3HHeJ_G0021827
protein coding gene Chr15:79565558-79589476 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022499
protein coding gene Chr15:83347080-83372304 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020029
protein coding gene Chr15:73903802-73928543 (+)
CAST/EiJ MGP_CASTEiJ_G0021348
protein coding gene Chr15:80297154-80320153 (+)
CBA/J MGP_CBAJ_G0021792
protein coding gene Chr15:85948855-85982235 (+)
DBA/2J MGP_DBA2J_G0021921
protein coding gene Chr15:76915979-76940677 (+)
FVB/NJ MGP_FVBNJ_G0021899
protein coding gene Chr15:75934933-75958398 (+)
LP/J MGP_LPJ_G0021989
protein coding gene Chr15:80374258-80398383 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021919
protein coding gene Chr15:91031359-91056557 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022513
protein coding gene Chr15:79609794-79640396 (+)
PWK/PhJ MGP_PWKPhJ_G0021091
protein coding gene Chr15:76915026-76941768 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020927
protein coding gene Chr15:79411665-79440705 (+)
WSB/EiJ MGP_WSBEiJ_G0021400
protein coding gene Chr15:80002207-80032572 (+)



Homology
more
  • Human Ortholog
    APOBEC3B, apolipoprotein B mRNA editing enzyme catalytic subunit 3B
  • Vertebrate Orthologs
    6
  • Human Ortholog
    APOBEC3B, apolipoprotein B mRNA editing enzyme catalytic subunit 3B
    Orthology source: HomoloGene
  • Synonyms
    A3B, APOBEC1L, ARCD3, ARP4, bK150C2.2, DJ742C19.2, PHRBNL
  • Links
    NCBI Gene ID: 9582
    neXtProt AC: NX_Q9UH17
    UniProt: Q9UH17

  • Chr Location
    22q13.1; chr22:38982399-38992779 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 3 alleles in 5 genetic backgrounds
    3 phenotypes from multigenic genotypes
    58 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trapped allele display more rapid and extensive spread of viral infection.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000009585 Ensembl Gene Model | MGI Sequence Detail 24248 C57BL/6J ±  kb
    transcript ENSMUST00000175714 Ensembl | MGI Sequence Detail 1953 Not Applicable  
    polypeptide ENSMUSP00000135027 Ensembl | MGI Sequence Detail 440 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 19
      Genomic 1
      cDNA 16
      Primer pair 2

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-13854, MGD-MRK-13857, MGI:5012302, MGI:97907
    References
    more
    • Summaries
      All 95
      Developmental Gene Expression 3
      Diseases 1
      Gene Ontology 10
      Phenotypes 58
    • Earliest
      J:6107 Chesebro B, et al., Identification of a non-H-2 gene (Rfv-3) influencing recovery from viremia and leukemia induced by Friend virus complex. Proc Natl Acad Sci U S A. 1979 Jan;76(1):425-9
    • Latest
      J:251462 Barrett BS, et al., Type I interferon signaling is required for the APOBEC3/Rfv3-dependent neutralizing antibody response but not innate retrovirus restriction. Retrovirology. 2017 Apr 17;14(1):25

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory