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Cstf2t Gene Detail
Summary
  • Symbol
    Cstf2t
  • Name
    cleavage stimulation factor, 3' pre-RNA subunit 2, tau
  • Synonyms
    64kDa, tCstF-64
  • Feature Type
    protein coding gene
  • IDs
    MGI:1932622
    NCBI Gene: 83410
  • Gene Overview
    MyGene.info: CSTF2T
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:31082841-31086590 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 25.94 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1932622
protein coding gene Chr19:31082841-31086592 (.)
129S1/SvImJ MGP_129S1SvImJ_G0025036
protein coding gene Chr19:29652768-29656527 (+)
A/J MGP_AJ_G0025013
protein coding gene Chr19:28164816-28168565 (+)
AKR/J MGP_AKRJ_G0024981
protein coding gene Chr19:29160886-29164635 (+)
BALB/cJ MGP_BALBcJ_G0025012
protein coding gene Chr19:28215826-28219575 (+)
C3H/HeJ MGP_C3HHeJ_G0024768
protein coding gene Chr19:29149324-29153073 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025453
protein coding gene Chr19:30468867-30472616 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022872
protein coding gene Chr19:28121180-28124899 (+)
CAST/EiJ MGP_CASTEiJ_G0024238
protein coding gene Chr19:29021792-29025554 (+)
CBA/J MGP_CBAJ_G0024746
protein coding gene Chr19:31910527-31914276 (+)
DBA/2J MGP_DBA2J_G0024878
protein coding gene Chr19:28102576-28106325 (+)
FVB/NJ MGP_FVBNJ_G0024840
protein coding gene Chr19:27932392-27936151 (+)
LP/J MGP_LPJ_G0024963
protein coding gene Chr19:29655222-29658981 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024867
protein coding gene Chr19:31803617-31807366 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025508
protein coding gene Chr19:29183542-29187291 (+)
PWK/PhJ MGP_PWKPhJ_G0023986
protein coding gene Chr19:27784406-27788136 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023790
protein coding gene Chr19:28531211-28534783 (+)
WSB/EiJ MGP_WSBEiJ_G0024305
protein coding gene Chr19:29249470-29253219 (+)



Homology
more
  • Human Ortholog
    CSTF2T, cleavage stimulation factor subunit 2 tau variant
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CSTF2T, cleavage stimulation factor subunit 2 tau variant
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CstF-64T
  • Links
    NCBI Gene ID: 23283
    neXtProt AC: NX_Q9H0L4
    UniProt: Q9H0L4

  • Chr Location
    10q21.1; chr10:51695486-51699595 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    2 images
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Male mice homozygous for a targeted null allele are infertile due to low sperm counts, significant developmental defects in spermiogenesis, and variable abnormalities in epididymal sperm morphology and motility consistent with oligoasthenoteratozoospermia. Homozygous null females are fertile.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000053536 Ensembl Gene Model | MGI Sequence Detail 3750 C57BL/6J ±  kb
    transcript ENSMUST00000066039 Ensembl | MGI Sequence Detail 3750 Not Applicable  
    polypeptide ENSMUSP00000093831 Ensembl | MGI Sequence Detail 632 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • Protein Ontology
      PR:000005977 cleavage stimulation factor subunit 2 tau variant
    • InterPro Domains
      IPR025742 Cleavage stimulation factor subunit 2, hinge domain
      IPR038192 CSTF2, C-terminal domain superfamily
      IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
      IPR035979 RNA-binding domain superfamily
      IPR000504 RNA recognition motif domain
      IPR026896 Transcription termination and cleavage factor, C-terminal domain
    Molecular
    Reagents
    less
    • All nucleic 98
      cDNA 97
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2147783
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 2
      Gene Ontology 6
      Phenotypes 6
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:251399 Harris JC, et al., The Cstf2t Polyadenylation Gene Plays a Sex-Specific Role in Learning Behaviors in Mice. PLoS One. 2016;11(11):e0165976

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory