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Egln3 Gene Detail
Summary
  • Symbol
    Egln3
  • Name
    egl-9 family hypoxia-inducible factor 3
  • Synonyms
    2610021G09Rik, Hif-p4h-3, Phd3, SM-20
  • Feature Type
    protein coding gene
  • IDs
    MGI:1932288
    NCBI Gene: 112407
  • Gene Overview
    MyGene.info: EGLN3
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:54178981-54203860 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 22.90 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    128 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1932288
protein coding gene Chr12:54178981-54203874 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019735
protein coding gene Chr12:53071412-53099621 (-)
A/J MGP_AJ_G0019697
protein coding gene Chr12:51213002-51237826 (-)
AKR/J MGP_AKRJ_G0019668
protein coding gene Chr12:52738927-52765696 (-)
BALB/cJ MGP_BALBcJ_G0019675
protein coding gene Chr12:51490262-51518699 (-)
C3H/HeJ MGP_C3HHeJ_G0019478
protein coding gene Chr12:52838710-52869183 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020123
protein coding gene Chr12:54688657-54719969 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017746
protein coding gene Chr12:49527405-49552073 (-)
CAST/EiJ MGP_CASTEiJ_G0019031
protein coding gene Chr12:47887408-47913815 (-)
CBA/J MGP_CBAJ_G0019450
protein coding gene Chr12:56576222-56603698 (-)
DBA/2J MGP_DBA2J_G0019564
protein coding gene Chr12:51067831-51093829 (-)
FVB/NJ MGP_FVBNJ_G0019553
protein coding gene Chr12:50490394-50515272 (-)
LP/J MGP_LPJ_G0019636
protein coding gene Chr12:53143544-53169702 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019589
protein coding gene Chr12:58212526-58239767 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020161
protein coding gene Chr12:52238106-52263669 (-)
PWK/PhJ MGP_PWKPhJ_G0018798
protein coding gene Chr12:45641379-45667581 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018592
protein coding gene Chr12:46825829-46853663 (-)
WSB/EiJ MGP_WSBEiJ_G0019082
protein coding gene Chr12:52714027-52741833 (-)



Homology
more
  • Human Ortholog
    EGLN3, egl-9 family hypoxia inducible factor 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    EGLN3, egl-9 family hypoxia inducible factor 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HIFP4H3, HIFPH3, PHD3
  • Links
    NCBI Gene ID: 112399
    neXtProt AC: NX_Q9H6Z9
    UniProt: Q9H6Z9

  • Chr Location
    14q13.1; chr14:33924215-33951078 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 32531
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: EGLN3
  • Gene Tree
Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    23 phenotypes from 3 alleles in 4 genetic backgrounds
    23 phenotypes from multigenic genotypes
    47 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous null mice display decreased apoptosis in SCG neurons, reduced adrenal medullary secretory capacity, abnormal adrenal medulla morphology, reduced circulating adrenaline and noradrenaline levels, and reduced systolic blood pressure.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
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    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000035105 Ensembl Gene Model | MGI Sequence Detail 24880 C57BL/6J ±  kb
    transcript ENSMUST00000039516 Ensembl | MGI Sequence Detail 2662 Not Applicable  
    polypeptide ENSMUSP00000041874 Ensembl | MGI Sequence Detail 239 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • EC
    • InterPro Domains
      IPR005123 Oxoglutarate/iron-dependent dioxygenase
      IPR006620 Prolyl 4-hydroxylase, alpha subunit
    Molecular
    Reagents
    less
    • All nucleic 108
      cDNA 107
      Primer pair 1

      Microarray probesets 5
    Other
    Accession IDs
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    MGI:1919408, MGI:2144852, MGI:2144873
    References
    more
    • Summaries
      All 97
      Developmental Gene Expression 13
      Diseases 1
      Gene Ontology 8
      Phenotypes 47
    • Earliest
      J:60099 Moschella MC, et al., SM-20 is a novel growth factor-responsive gene regulated during skeletal muscle development and differentiation. Gene Expr. 1999;8(1):59-66
    • Latest
      J:254708 Yoshinaga M, et al., Regnase-1 Maintains Iron Homeostasis via the Degradation of Transferrin Receptor 1 and Prolyl-Hydroxylase-Domain-Containing Protein 3 mRNAs. Cell Rep. 2017 May 23;19(8):1614-1630

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory