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Sil1
Gene Detail
 Symbol
Name
ID
Sil1
endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
MGI:1932040
Synonyms 1810057E01Rik
Feature Type protein coding gene
Genetic Map
Chromosome 18
18.97 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:35266400-35498925 bp, - strand
From Ensembl annotation of GRCm38

  232526 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32544  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Gene Tree: Sil1

Human
homologs
Human Homolog SIL1, SIL1 nucleotide exchange factor
NCBI Gene ID 64374
neXtProt AC  NX_Q9H173
Human Synonyms  BAP, MSS, ULG5
Human Chr (Location)  5q31; chr5:138946720-139198376 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human SIL1
Alleles
and
phenotypes
All alleles(22) : Targeted(2) Gene trapped(19) Spontaneous(1)
 
Mice homozygous for a gene trapped allele or spontaneous mutation exhibit ataxia and Purkinje cell degeneration.
 
Human Diseases Modeled Using Mouse Sil1 (1)    Alleles Annotated to Human Diseases(1)   
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process protein transport, transport
Component endoplasmic reticulum
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (81)    Tissues (20)    Images (41)
Theiler Stages: 20, 23, 28
Assay TypeResults
Immunohistochemistry 14
RNA in situ 67
cDNA source data(67)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(67) cDNA(67)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000024357 (Evidence)
Entrez Gene81500 (Evidence)
UniGene291482
DFCITC1576410, TC1642134, TC1726855
DoTSDT.489567, DT.91446863
NIA Mouse Gene IndexU038320
Consensus CDS ProjectCCDS29140.1
International Mouse Knockout Project StatusSil1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024357 Ensembl Gene Model | MGI Sequence Detail 232526 C57BL/6J ±  kb
transcript ENSMUST00000025215 Ensembl | MGI Sequence Detail 1695 Not Applicable 
polypeptide ENSMUSP00000025215 Ensembl | MGI Sequence Detail 465 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(8) UniProt(1)
Polymorphisms SNPs within 2kb(1195 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
Protein Ontology PR:000014873 nucleotide exchange factor SIL1
References (Earliest) J:66100 Tyson JR, et al., LHS1 and SIL1 provide a lumenal function that is essential for protein translocation into the endoplasmic reticulum. EMBO J. 2000 Dec 1;19(23):6440-52
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)
Other
accession IDs
MGI:1923775, MGI:2147193, MGI:2182806

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory