Btnl5-ps Pseudogene Detail

Summary

• Symbol
  Btnl5-ps
• Name
  butyrophilin-like 5, pseudogene
• Synonyms
  Btnl5, ENSMUSG00000073420, NG12

• Feature Type
  pseudogene
• IDs
  MGI:1932037
  NCBI Gene: 81497
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:34707044-34714978 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.08 cM
• Mapping Data
  2 experiments

Strain
Comparison

• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1932037	pseudogene	Chr17:34706379-34716403 (-)
129S1/SvImJ	ENSMUSG00200051599	pseudogene	Chr17:30410189-30419545 (-)
A/J	ENSMUSG00195047583	pseudogene	Chr17:31275652-31285048 (-)
AKR/J	ENSMUSG00220054024	pseudogene	Chr17:30303272-30312672 (-)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175041996	pseudogene	Chr17:30189398-30198791 (-)
C57BL/6NJ	ENSMUSG00215053296	pseudogene	Chr17:30250363-30259722 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036954	pseudogene	Chr17:31321670-31329578 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210051138	pseudogene	Chr17:30011508-30020903 (-)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205053829	pseudogene	Chr17:30525898-30535286 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230054800	pseudogene	Chr17:33808480-33817835 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225054895	pseudogene	Chr17:35844116-35855681 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010050110	pseudogene	Chr17:30934957-30944336 (-)
WSB/EiJ	ENSIUOG00005052321	pseudogene	Chr17:30862492-30871882 (-)

Homology

• Gene Tree
  Btnl5-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Btnl5-ps
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000073420 (Evidence)
• NCBI Gene
  81497

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073420	Ensembl Gene Model | MGI Sequence Detail	7935	C57BL/6J
transcript	ENSMUST00000097346	Ensembl | MGI Sequence Detail	1751	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 3

Other
Accession IDs

MGI:3642782

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:61935 Stammers M, et al., BTL-II: a polymorphic locus with homology to the butyrophilin gene family, located at the border of the major histocompatibility complex class II and class III regions in human and mouse. Immunogenetics. 2000 Apr;51(4-5):373-82
• Latest
  J:291989 Jandke A, et al., Butyrophilin-like proteins display combinatorial diversity in selecting and maintaining signature intraepithelial gammadelta T cell compartments. Nat Commun. 2020 Jul 28;11(1):3769