Snord82 Gene Detail

Summary

• Symbol
  Snord82
• Name
  small nucleolar RNA, C/D box 82
• Synonyms
  Rnu82, U82, Z25

• Feature Type
  snoRNA gene
• IDs
  MGI:1931502
  NCBI Gene: 80828
• Alliance
  gene page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr1:86283982-86284049 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1931502	snoRNA gene	Chr1:86283982-86284052 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038419	snoRNA gene	Chr1:87610346-87610415 (-)
A/J	MGP_AJ_G0038410	snoRNA gene	Chr1:84366479-84366548 (-)
AKR/J	MGP_AKRJ_G0038347	snoRNA gene	Chr1:86829286-86829355 (-)
BALB/cJ	MGP_BALBcJ_G0038396	snoRNA gene	Chr1:84484306-84484375 (-)
C3H/HeJ	MGP_C3HHeJ_G0038059	snoRNA gene	Chr1:87064488-87064557 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038934	snoRNA gene	Chr1:90951069-90951138 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035718	snoRNA gene	Chr1:78861230-78861298 (-)
CAST/EiJ	MGP_CASTEiJ_G0037205	snoRNA gene	Chr1:86310563-86310632 (-)
CBA/J	MGP_CBAJ_G0038031	snoRNA gene	Chr1:93773644-93773713 (-)
DBA/2J	MGP_DBA2J_G0038222	snoRNA gene	Chr1:83674879-83674948 (-)
FVB/NJ	MGP_FVBNJ_G0038172	snoRNA gene	Chr1:82732442-82732511 (-)
LP/J	MGP_LPJ_G0038261	snoRNA gene	Chr1:88714613-88714682 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038171	snoRNA gene	Chr1:97044240-97044309 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039043	snoRNA gene	Chr1:86945545-86945614 (-)
PWK/PhJ	MGP_PWKPhJ_G0036892	snoRNA gene	Chr1:82961775-82961844 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036648	snoRNA gene	Chr1:85904865-85904934 (-)
WSB/EiJ	MGP_WSBEiJ_G0037435	snoRNA gene	Chr1:86590054-86590123 (-)

Homology

• Human Ortholog
  SNORD82, small nucleolar RNA, C/D box 82

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SNORD82, small nucleolar RNA, C/D box 82
  
• Synonyms
  RNU82, U82, Z25
• Links
  HGNC:10240

  NCBI Gene ID: 25826

  
  
• Chr Location
  2q37.1; chr2:231460368-231460442 (-)  GRCh38

---

• MGI Vertebrate Homology
  Snord82 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SNORD82
• Gene Tree
  Snord82
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000064823 (Evidence)
• NCBI Gene
  80828

Representative Sequences			Length	Strain/Species
genomic	80828	NCBI Gene Model | MGI Sequence Detail	68	C57BL/6J
transcript	NR_002851	RefSeq | MGI Sequence Detail	68	Not Specified

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:57462 Rebane A, et al., U82, a novel snoRNA identified from the fifth intron of human and mouse nucleolin gene. Biochim Biophys Acta. 1999 Sep 3;1446(3):426-30

TSS for Snord82:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12785	Chr1:86285142-86285156 (-)	-1,100 bp
Tssr12784	Chr1:86285103-86285127 (-)	-1,066 bp
Tssr12783	Chr1:86285086-86285100 (-)	-1,044 bp
Tssr12782	Chr1:86285035-86285066 (-)	-1,002 bp
Tssr12781	Chr1:86284949-86284991 (-)	-921 bp
Tssr12780	Chr1:86284905-86284943 (-)	-875 bp
Tssr12779	Chr1:86284872-86284890 (-)	-832 bp
Tssr12778	Chr1:86284795-86284871 (-)	-784 bp
Tssr12777	Chr1:86284753-86284794 (-)	-725 bp
Tssr12776	Chr1:86284360-86284373 (-)	-318 bp
Tssr12775	Chr1:86284174-86284186 (-)	-131 bp
Tssr12774	Chr1:86284025-86284050 (-)	11 bp