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Calm4
Gene Detail
 Symbol
Name
ID
Calm4
calmodulin 4
MGI:1931464
Synonyms 2310037J09Rik, DD112, Scarf
Feature Type protein coding gene
Genetic Map
Chromosome 13
2.15 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr13:3837757-3838671 bp, + strand
From NCBI annotation of GRCm38

  915 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:49485  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Calm4

Human
homologs
Human Homolog CALML5, calmodulin-like 5
NCBI Gene ID 51806
neXtProt AC  NX_Q9NZT1
Human Synonyms  CLSP
Human Chr (Location)  10p15.1; chr10:5498695-5499570 (-)  GRCh38
Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Calm4 interacts with 59 markers (Mir98, Mir124a-1, Mir124a-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Component extracellular vesicular exosome
Function calcium ion binding, metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (45)    Tissues (30)    Images (28)
Theiler Stages: 18, 23, 24, 25, 27, 28
Assay TypeResults
Immunohistochemistry 20
RNA in situ 11
Northern blot 14
cDNA source data(46)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(47) cDNA(46) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000033765 (Evidence)
Entrez Gene80796 (Evidence)
UniGene21075
DFCITC1579290
DoTSDT.87069580
NIA Mouse Gene IndexU014505
Consensus CDS ProjectCCDS26215.1
International Mouse Knockout Project StatusCalm4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 80796 NCBI Gene Model | MGI Sequence Detail 915 C57BL/6J ±  kb
transcript NM_020036 RefSeq | MGI Sequence Detail 936 C57BL/6 
polypeptide Q9JM83 UniProt | EBI | MGI Sequence Detail 148 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(16 from dbSNP Build 137)    SNPs within 2kb including multiple locations(34)
Protein-related
information
ResourceIDDescription
InterPro IPR018247 EF-Hand 1, calcium-binding site
InterPro IPR002048 EF-hand domain
InterPro IPR011992 EF-hand-like domain
Protein Ontology PR:000006162 calmodulin-4
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(30)
Other
accession IDs
MGI:1913632, MGI:2145278

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/02/2014
MGI 5.19
The Jackson Laboratory