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Calm4
Gene Detail
Symbol

Name
ID
Calm4
calmodulin 4
MGI:1931464
Synonyms
2310037J09Rik, DD112, Scarf
Feature Type
protein coding gene
Genetic Map
Chromosome 13
2.15 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr13:3837757-3838671 bp, + strand
From NCBI annotation of GRCm38

  915 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:49485  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: CALML5
Gene Tree: Calm4

Human
homologs
CALML5, calmodulin-like 5
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 51806
neXtProt AC: NX_Q9NZT1

Human Synonyms: CLSP

Human Chr (Location): 10p15.1; chr10:5498695-5499570 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Calm4 interacts with 59 markers (Mir98, Mir124a-1, Mir124a-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Component extracellular exosome
Function calcium ion binding, metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (45)    Tissues (30)    Images (28)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 20
RNA in situ 11
Northern blot 14
cDNA source data(46)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(47) cDNA(46) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000033765 (Evidence)
Entrez Gene 80796 (Evidence)
UniGene 21075
DFCI TC1579290
DoTS DT.87069580
NIA Mouse Gene Index U014505
Consensus CDS Project CCDS26215.1
International Mouse Phenotyping Consortium Status Calm4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 80796 NCBI Gene Model | MGI Sequence Detail 915 C57BL/6J ±  kb
transcript NM_020036 RefSeq | MGI Sequence Detail 936 C57BL/6 
polypeptide Q9JM83 UniProt | EBI | MGI Sequence Detail 148 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(16 from dbSNP Build 137)    SNPs within 2kb including multiple locations(34)
Protein-related
information
ResourceIDDescription
InterPro IPR018247 EF-Hand 1, calcium-binding site
InterPro IPR002048 EF-hand domain
InterPro IPR011992 EF-hand-like domain
Protein Ontology PR:000006162 calmodulin-4
Graphical View of Protein Domain Structure
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(29)
Other
accession IDs
MGI:1913632, MGI:2145278

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory