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Slc43a1
Gene Detail
Symbol

Name
ID
Slc43a1
solute carrier family 43, member 1
MGI:1931352
Synonyms
2610016F07Rik, Lat3, PB39, Pov1
Feature Type
protein coding gene
Genetic Map
Chromosome 2
49.45 cM, cytoband E1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr2:84838850-84863594 bp, + strand
From VEGA annotation of GRCm38

  24745 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2688  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC43A1
Gene Tree: Slc43a1

Human
homologs
SLC43A1, solute carrier family 43 (amino acid system L transporter), member 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 8501
neXtProt AC: NX_O75387

Human Synonyms: LAT3, PB39, POV1, R00504

Human Chr (Location): 11q12.1; chr11:57484531-57515719 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(9) Targeted(5)
Genomic Mutations involving Slc43a1 (2)
Interactions
Slc43a1 interacts with 106 markers (Mir15a, Mir18, Mir19a, ...)
Expression
Literature Summary: (2 records)
Data Summary: Results (125)    Tissues (97)    Images (21)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 125
cDNA source data(11)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc43a1 ; ZFIN slc43a1a    NEW 
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000013724 (Evidence)
Ensembl Gene Model ENSMUSG00000027075 (Evidence)
Entrez Gene 72401 (Evidence)
Consensus CDS Project CCDS38162.1, CCDS38163.1, CCDS50624.1
International Mouse Phenotyping Consortium Status Slc43a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000013724 VEGA Gene Model | MGI Sequence Detail 24745 C57BL/6J ±  kb
transcript OTTMUST00000032895 VEGA | MGI Sequence Detail 2487 Not Applicable 
polypeptide OTTMUSP00000014700 VEGA | MGI Sequence Detail 590 Not Applicable 

For the selected sequences
All sequences(62) RefSeq(19) UniProt(4)
Polymorphisms
SNPs within 2kb(132 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011701 Major facilitator superfamily
InterPro IPR020846 Major facilitator superfamily domain
Protein Ontology PR:000015141 large neutral amino acids transporter small subunit 3
References
(Earliest) J:49540 Cole KA, et al., cDNA sequencing and analysis of POV1 (PB39): a novel gene up-regulated in prostate cancer. Genomics. 1998 Jul 15;51(2):282-7
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)
Other
accession IDs
MGI:1919651, MGI:2138819

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory