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Stx12
Gene Detail
Symbol

Name
ID
Stx12
syntaxin 12
MGI:1931027
Synonyms
Stx13, syntaxin 13
Feature Type
protein coding gene
Genetic Map
Chromosome 4
66.01 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr4:132853501-132884509 bp, - strand
From VEGA annotation of GRCm38

  31009 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128192  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: STX12
Gene Tree: Stx12

Human
homologs
STX12, syntaxin 12
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 23673
neXtProt AC: NX_Q86Y82

Human Synonyms: STX13, STX14

Human Chr (Location): 1p35.3; chr1:27773183-27824452 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(21) : Gene trapped(18) Targeted(3)
Genomic Mutations involving Stx12 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Stx12 interacts with 255 markers (Mir16-1, Mir16-2, Mir19a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (23 annotations)
Process cholesterol efflux, intracellular protein transport, ...
Component BLOC-1 complex, endomembrane system, ...
Function protein binding, SNAP receptor activity, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (53)    Tissues (10)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 53
cDNA source data(14)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase stx12 ; ZFIN stx12    NEW 
Molecular
reagents
All nucleic(14) cDNA(14)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000010095 (Evidence)
Ensembl Gene Model ENSMUSG00000028879 (Evidence)
Entrez Gene 100226 (Evidence)
DFCI TC1572481, TC1602009, TC1761142
DoTS DT.101144260, DT.533639
NIA Mouse Gene Index U025610
Consensus CDS Project CCDS18737.1
International Mouse Phenotyping Consortium Status Stx12
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010095 VEGA Gene Model | MGI Sequence Detail 31009 C57BL/6J ±  kb
transcript OTTMUST00000023484 VEGA | MGI Sequence Detail 2934 Not Applicable 
polypeptide OTTMUSP00000010726 VEGA | MGI Sequence Detail 274 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(309 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006012 Syntaxin/epimorphin, conserved site
InterPro IPR006011 Syntaxin, N-terminal
InterPro IPR000727 Target SNARE coiled-coil domain
InterPro IPR010989 t-SNARE
Protein Ontology PR:000015787 syntaxin-12
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(36)
Other
accession IDs
MGI:2140384, MGI:2140479

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory