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Stx12 Gene Detail
Summary
  • Symbol
    Stx12
  • Name
    syntaxin 12
  • Synonyms
    Stx13, syntaxin 13
  • Feature Type
    protein coding gene
  • IDs
    MGI:1931027
    NCBI Gene: 100226
  • Gene Overview
    MyGene.info: STX12
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:132854064-132884458 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 66.01 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    298 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1931027
protein coding gene Chr4:132853501-132884509 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028882
protein coding gene Chr4:135055206-135089604 (-)
A/J MGP_AJ_G0028841
protein coding gene Chr4:129424784-129456529 (-)
AKR/J MGP_AKRJ_G0028794
protein coding gene Chr4:133071863-133104060 (-)
BALB/cJ MGP_BALBcJ_G0028864
protein coding gene Chr4:130039778-130071102 (-)
C3H/HeJ MGP_C3HHeJ_G0028578
protein coding gene Chr4:133332373-133363666 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029306
protein coding gene Chr4:139917903-139948960 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026577
protein coding gene Chr4:122496016-122527424 (-)
CAST/EiJ MGP_CASTEiJ_G0028011
protein coding gene Chr4:131405243-131444655 (-)
CBA/J MGP_CBAJ_G0028544
protein coding gene Chr4:143507481-143540946 (-)
DBA/2J MGP_DBA2J_G0028693
protein coding gene Chr4:129840452-129872169 (-)
FVB/NJ MGP_FVBNJ_G0028660
protein coding gene Chr4:128706371-128737375 (-)
LP/J MGP_LPJ_G0028794
protein coding gene Chr4:135193403-135224321 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028686
protein coding gene Chr4:148102904-148134948 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029344
protein coding gene Chr4:133489943-133524063 (-)
PWK/PhJ MGP_PWKPhJ_G0027732
protein coding gene Chr4:126539658-126571185 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027558
protein coding gene Chr4:129324759-129358674 (-)
WSB/EiJ MGP_WSBEiJ_G0028091
protein coding gene Chr4:133658800-133694844 (-)



Homology
more
  • Human Ortholog
    STX12, syntaxin 12
  • Vertebrate Orthologs
    10
  • Human Ortholog
    STX12, syntaxin 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    STX13, STX14
  • Links
    NCBI Gene ID: 23673
    neXtProt AC: NX_Q86Y82
    UniProt: Q86Y82

  • Chr Location
    1p35.3; chr1:27773183-27824452 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 128192
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: STX12
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100226 NCBI Gene Model | MGI Sequence Detail 30395 C57BL/6J ±  kb
transcript NM_133887 RefSeq | MGI Sequence Detail 2320 C57BL/6  
polypeptide Q9ER00 UniProt | EBI | MGI Sequence Detail 274 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 5
Other
Accession IDs
less
MGI:2140384, MGI:2140479
References
more
  • Summaries
    All 43
    Developmental Gene Expression 4
    Gene Ontology 8
    Phenotypes 8
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:244911 Zhang M, et al., Post-transcriptional regulation of mouse neurogenesis by Pumilio proteins. Genes Dev. 2017 Aug 9;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory