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Stx12 Gene Detail
Summary
  • Symbol
    Stx12
  • Name
    syntaxin 12
  • Synonyms
    Stx13, syntaxin 13
  • Feature Type
    protein coding gene
  • IDs
    MGI:1931027
    NCBI Gene: 100226
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
  • Candidate for QTL
    1 QTL
Location &
Maps
more
  • Sequence Map
    Chr4:132581375-132611769 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 66.01 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    778 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1931027
 protein coding gene Chr4:132580812-132611820 (-)
129S1/SvImJ ENSMUSG00200020348
 protein coding gene Chr4:126034228-126065232 (-)
A/J ENSMUSG00195035840
 protein coding gene Chr4:127359042-127389829 (-)
AKR/J ENSMUSG00220045132
 protein coding gene Chr4:126350844-126381628 (-)
BALB/cJ ENSMUSG00180042204
 protein coding gene Chr4:124992844-125023630 (-)
C3H/HeJ ENSMUSG00175043033
 protein coding gene Chr4:126005167-126035950 (-)
C57BL/6NJ ENSMUSG00215050508
 protein coding gene Chr4:127511136-127542152 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026577
 protein coding gene Chr4:122496016-122527424 (-)
CAST/EiJ ENSTCUG00005047027
 protein coding gene Chr4:126905622-126936939 (-)
CBA/J ENSMUSG00210053857
 protein coding gene Chr4:125634176-125664958 (-)
DBA/2J ENSMUSG00185050094
 protein coding gene Chr4:127166501-127197281 (-)
FVB/NJ ENSMUSG00205045939
 protein coding gene Chr4:125410204-125441214 (-)
JF1/MsJ ENSUMUG00000043871
 protein coding gene Chr4:127832636-127863999 (-)
LP/J ENSMUSG00230029280
 protein coding gene Chr4:130972684-131003685 (-)
NOD/ShiLtJ ENSMUSG00190028913
 protein coding gene Chr4:125398844-125429624 (-)
NZO/HlLtJ ENSMUSG00225024869
 protein coding gene Chr4:136877151-136907932 (-)
PWK/PhJ ENSLUMG00010043560
 protein coding gene Chr4:124851517-124882297 (-)
SPRET/EiJ ENSMSPG00010039047
 protein coding gene Chr4:126923614-126955031 (-)
WSB/EiJ ENSIUOG00005033765
 protein coding gene Chr4:125291781-125322791 (-)



Homology
more
  • Human Ortholog
    STX12, syntaxin 12
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    STX12, syntaxin 12
  • Synonyms
    STX13, STX14
  • Links
    NCBI Gene ID: 23673
    UniProt: Q86Y82

  • Chr Location
    1p35.3; chr1:27773195-27824443 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    66
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    804
  • Tissues
    103
  • cDNA Data
    15
  • Literature Summary
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100226 NCBI Gene Model | MGI Sequence Detail 30395 C57BL/6J ±  kb
transcript NM_133887 RefSeq | MGI Sequence Detail 2883 C57BL/6  
polypeptide Q9ER00 UniProt | EBI | MGI Sequence Detail 274 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 15
    Other 1
    Antibodies 2

    Microarray probesets 5
Other
Accession IDs
less
MGI:2140384, MGI:2140479
References
more
  • Summaries
    All 56
    Developmental Gene Expression 8
    Gene Ontology 11
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:376296 Feng W, et al., ASNA1 is essential for cardiac development and function by regulating tail-anchored protein stability and vesicular transport in cardiomyocytes. PLoS Genet. 2025 Dec;21(12):e1011964
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory