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Gar1
Gene Detail
Symbol

Name
ID
Gar1
GAR1 ribonucleoprotein homolog (yeast)
MGI:1930948
Synonyms
C430047J18Rik, GAR1, Nola1
Feature Type
protein coding gene
Genetic Map
Chromosome 3
59.16 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:129824912-129831396 bp, - strand
From VEGA annotation of GRCm38

  6485 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HCOP human homology predictions: GAR1
Gene Tree: Gar1
Human
homologs
GAR1, GAR1 homolog, ribonucleoprotein
Orthology source: HGNC

IDs:
NCBI Gene ID: 54433
neXtProt AC: NX_Q9NY12

Human Synonyms: NOLA1

Human Chr (Location): 4q25; chr4:109815510-109824737 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(16) : Gene trapped(14) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Gar1 interacts with 29 markers (Mir18, Mir18b, Mir93, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process pseudouridine synthesis, ribosome biogenesis, ...
Component box H/ACA snoRNP complex, dense fibrillar component, ...
Function RNA binding, snoRNA binding
External Resources: FuncBase
Expression
cDNA source data(47)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase gar1 ; ZFIN gar1    NEW 
Molecular
reagents
All nucleic(47) cDNA(47)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000028857 (Evidence)
Ensembl Gene Model ENSMUSG00000028010 (Evidence)
Entrez Gene 68147 (Evidence)
UniGene 24873
DFCI TC1678632, TC1596787, TC1588262, TC1581719
DoTS DT.101388038, DT.101388037, DT.490410
NIA Mouse Gene Index U024642
Consensus CDS Project CCDS38634.1
International Mouse Phenotyping Consortium Status Gar1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028857 VEGA Gene Model | MGI Sequence Detail 6485 C57BL/6J ±  kb
transcript OTTMUST00000071463 VEGA | MGI Sequence Detail 1271 Not Applicable 
polypeptide OTTMUSP00000036621 VEGA | MGI Sequence Detail 231 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(4) UniProt(4)
Polymorphisms
SNPs within 2kb(130 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021154 H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote
InterPro IPR007504 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
InterPro IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel
Protein Ontology PR:000007844 H/ACA ribonucleoprotein complex subunit 1
References
(Earliest) J:65787 Pogacic V, et al., Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10. Mol Cell Biol. 2000 Dec;20(23):9028-40
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(34)
Other
accession IDs
MGI:1915397, MGI:2139572, MGI:2139683

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory