About   Help   FAQ
Trpc4ap
Gene Detail
Symbol

Name
ID
Trpc4ap
transient receptor potential cation channel, subfamily C, member 4 associated protein
MGI:1930751
Synonyms
4833429F06Rik, D2Ertd113e, Trp4-associated protein TAP1, Trrp4ap
Feature Type
protein coding gene
Genetic Map
Chromosome 2
77.26 cM, cytoband H2
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr2:155634271-155692384 bp, - strand
From VEGA annotation of GRCm38

  58114 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9224  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Trpc4ap

Human
homologs
Human Homolog TRPC4AP, transient receptor potential cation channel, subfamily C, member 4 associated protein
NCBI Gene ID 26133
neXtProt AC  NX_Q8TEL6
Human Synonyms  C20orf188, PPP1R158, TRRP4AP, TRUSS
Human Chr (Location)  20q11.22; chr20:35002404-35092815 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(8) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Trpc4ap interacts with 133 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process protein ubiquitination, ubiquitin-dependent protein catabolic process
Component Cul4A-RING E3 ubiquitin ligase complex
Function phosphatase binding
External Resources: FuncBase
Expression
cDNA source data(16)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) cDNA(16) Primer pair(1)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000016133 (Evidence)
Ensembl Gene ModelENSMUSG00000038324 (Evidence)
Entrez Gene56407 (Evidence)
Consensus CDS ProjectCCDS16952.1, CCDS50769.1
International Mouse Knockout Project StatusTrpc4ap
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016133 VEGA Gene Model | MGI Sequence Detail 58114 C57BL/6J ±  kb
transcript OTTMUST00000038562 VEGA | MGI Sequence Detail 3204 Not Applicable 
polypeptide OTTMUSP00000017262 VEGA | MGI Sequence Detail 797 Not Applicable 

For the selected sequences
All sequences(125) RefSeq(4) UniProt(13)
Polymorphisms
SNPs within 2kb(387 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR016024 Armadillo-type fold
InterPro IPR022162 Protein of unknown function DUF3689
Protein Ontology PR:000016694 short transient receptor potential channel 4-associated protein
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)
Other
accession IDs
MGI:1098722, MGI:2444616

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/11/2014
MGI 5.20
The Jackson Laboratory