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Trpc4ap Gene Detail
Summary
  • Symbol
    Trpc4ap
  • Name
    transient receptor potential cation channel, subfamily C, member 4 associated protein
  • Synonyms
    4833429F06Rik, D2Ertd113e, Trp4-associated protein TAP1, Trrp4ap
  • Feature Type
    protein coding gene
  • IDs
    MGI:1930751
    NCBI Gene: 56407
  • Gene Overview
    MyGene.info: TRPC4AP
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:155634277-155692384 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 77.26 cM, cytoband H2
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    384 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1930751
protein coding gene Chr2:155634271-155692384 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026739
protein coding gene Chr2:160470241-160530038 (-)
A/J MGP_AJ_G0026705
protein coding gene Chr2:154090417-154150402 (-)
AKR/J MGP_AKRJ_G0026676
protein coding gene Chr2:158559019-158621105 (-)
BALB/cJ MGP_BALBcJ_G0026714
protein coding gene Chr2:154393381-154451527 (-)
C3H/HeJ MGP_C3HHeJ_G0026457
protein coding gene Chr2:158921866-158984227 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027163
protein coding gene Chr2:165171143-165236157 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024533
protein coding gene Chr2:147590144-147647053 (-)
CAST/EiJ MGP_CASTEiJ_G0025918
protein coding gene Chr2:159234559-159299259 (-)
CBA/J MGP_CBAJ_G0026434
protein coding gene Chr2:171171965-171241434 (-)
DBA/2J MGP_DBA2J_G0026571
protein coding gene Chr2:153271278-153329204 (-)
FVB/NJ MGP_FVBNJ_G0026538
protein coding gene Chr2:151648959-151707707 (-)
LP/J MGP_LPJ_G0026676
protein coding gene Chr2:160614391-160673529 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026559
protein coding gene Chr2:175165194-175225572 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027219
protein coding gene Chr2:158446402-158505257 (-)
PWK/PhJ MGP_PWKPhJ_G0025652
protein coding gene Chr2:152768663-152827802 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025455
protein coding gene Chr2:157372966-157437453 (-)
WSB/EiJ MGP_WSBEiJ_G0025988
protein coding gene Chr2:159333984-159397649 (-)



Homology
more
  • Human Ortholog
    TRPC4AP, transient receptor potential cation channel subfamily C member 4 associated protein
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRPC4AP, transient receptor potential cation channel subfamily C member 4 associated protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C20orf188, PPP1R158, TRRP4AP, TRUSS
  • Links
    NCBI Gene ID: 26133
    neXtProt AC: NX_Q8TEL6
    UniProt: Q8TEL6

  • Chr Location
    20q11.22; chr20:35002404-35092837 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56407 NCBI Gene Model | MGI Sequence Detail 58108 C57BL/6J ±  kb
transcript NM_001163452 RefSeq | MGI Sequence Detail 3219 C57BL/6  
polypeptide Q9JLV2 UniProt | EBI | MGI Sequence Detail 797 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    7 Sequences
  • Protein Ontology
    PR:000016694 short transient receptor potential channel 4-associated protein
  • InterPro Domains
    IPR016024 Armadillo-type fold
    IPR022162 Short transient receptor potential channel 4-associated protein
Molecular
Reagents
less
  • All nucleic 18
    cDNA 17
    Primer pair 1

    Microarray probesets 7
Other
Accession IDs
less
MGI:1098722, MGI:2444616
References
more
  • Summaries
    All 30
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:232539 DiTommaso T, et al., Identification of genes important for cutaneous function revealed by a large scale reverse genetic screen in the mouse. PLoS Genet. 2014 Oct;10(10):e1004705

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory