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Apom
Gene Detail
Symbol

Name
ID
Apom
apolipoprotein M
MGI:1930124
Synonyms
1190010O19Rik, G3a, NG20
Feature Type
protein coding gene
Genetic Map
Chromosome 17
18.59 cM, cytoband B2
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr17:35128997-35132050 bp, - strand
From VEGA annotation of GRCm38

  3054 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10308  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog

HCOP human homology predictions: APOM
Gene Tree: Apom

Human
homologs
APOM, apolipoprotein M
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 55937
neXtProt AC: NX_O95445

Human Synonyms: apo-M, G3a, HSPC336, NG20

Human Chr (Location): 6p21.33; chr6:31652410-31658210 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(23) : Gene trapped(19) Targeted(4)
 
Mice homozygous for a null allele exhibit decreased plasma cholesterol and triglyceride levels.
 
Interactions
Apom interacts with 15 markers (Mir96, Mir136, Mir141, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (7 records)
Data Summary: Results (99)    Tissues (75)    Images (26)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 81
Northern blot 18
cDNA source data(60)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase apom    NEW 
Molecular
reagents
All nucleic(62) cDNA(60) Primer pair(1) Other(1)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000037182 (Evidence)
Ensembl Gene Model ENSMUSG00000024391 (Evidence)
Entrez Gene 55938 (Evidence)
UniGene 2161
DFCI TC1579902, TC1699401, TC1764796
DoTS DT.94235380, DT.494323
NIA Mouse Gene Index U037740
PDB 2XKL
Consensus CDS Project CCDS28687.1
International Mouse Phenotyping Consortium Status Apom
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037182 VEGA Gene Model | MGI Sequence Detail 3054 C57BL/6J ±  kb
transcript OTTMUST00000095811 VEGA | MGI Sequence Detail 1013 Not Applicable 
polypeptide OTTMUSP00000053488 VEGA | MGI Sequence Detail 190 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(25 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR022734 Apolipoprotein M
InterPro IPR012674 Calycin
InterPro IPR011038 Calycin-like
Protein Ontology PR:000004165 apolipoprotein M
References
(Earliest) J:63110 Martin AM, et al., Immunol Today. 2000;21(7):Centerfold
(Latest) J:206702 Ma X, et al., Anti-inflammatory effects of propofol are mediated by apolipoprotein M in a hepatocyte nuclear factor-1alpha-dependent manner. Arch Biochem Biophys. 2013 May;533(1-2):1-10
All references(47)
Other
accession IDs
MGI:1916162

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory