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Apom
Gene Detail
Symbol

Name
ID
Apom
apolipoprotein M
MGI:1930124
Synonyms
1190010O19Rik, G3a, NG20
Feature Type
protein coding gene
Genetic Map
Chromosome 17
18.59 cM, cytoband B2
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr17:35128997-35132050 bp, - strand
From VEGA annotation of GRCm38

  3054 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10308  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog

Gene Tree: Apom

Human
homologs
Human Homolog APOM, apolipoprotein M
NCBI Gene ID 55937
neXtProt AC  NX_O95445
Human Synonyms  apo-M, G3a, HSPC336, NG20
Human Chr (Location)  6p21.33; chr6:31652410-31658210 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(23) : Gene trapped(19) Targeted(4)
 
Mice homozygous for a null allele exhibit decreased plasma cholesterol and triglyceride levels.
 
Interactions
Apom interacts with 15 markers (Mir96, Mir136, Mir141, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (7 records)
Data Summary: Results (99)    Tissues (75)    Images (26)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 81
Northern blot 18
cDNA source data(60)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(62) cDNA(60) Primer pair(1) Other(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000037182 (Evidence)
Ensembl Gene ModelENSMUSG00000024391 (Evidence)
Entrez Gene55938 (Evidence)
UniGene2161
DFCITC1579902, TC1699401, TC1764796
DoTSDT.494323, DT.94235380
NIA Mouse Gene IndexU037740
PDB2XKL
Consensus CDS ProjectCCDS28687.1
International Mouse Knockout Project StatusApom
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037182 VEGA Gene Model | MGI Sequence Detail 3054 C57BL/6J ±  kb
transcript OTTMUST00000095811 VEGA | MGI Sequence Detail 1013 Not Applicable 
polypeptide OTTMUSP00000053488 VEGA | MGI Sequence Detail 190 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(25 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR022734 Apolipoprotein M
InterPro IPR012674 Calycin
InterPro IPR011038 Calycin-like
Protein Ontology PR:000004165 apolipoprotein M
References
(Earliest) J:58154 Xu N, et al., A novel human apolipoprotein (apoM). J Biol Chem. 1999 Oct 29;274(44):31286-90
(Latest) J:202392 Elsoe S, et al., Apolipoprotein M promotes mobilization of cellular cholesterol in vivo. Biochim Biophys Acta. 2013 Jul;1831(7):1287-92
All references(48)
Other
accession IDs
MGI:1916162

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory