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Clstn2 Gene Detail
Summary
  • Symbol
    Clstn2
  • Name
    calsyntenin 2
  • Synonyms
    2900042C18Rik, CS2, Cst-2, CSTN2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929897
    NCBI Gene: 64085
Location & Maps
more
  • Sequence Map
    Chr9:97444395-98033181 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      588787 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 51.06 cM, cytoband E4
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CLSTN2, calsyntenin 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CLSTN2, calsyntenin 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    alcagamma, ALC-GAMMA, CDHR13, CS2, CSTN2
  • Links
    NCBI Gene ID: 64084
    neXtProt AC: NX_Q9H4D0

  • Chr Location
    3q23; chr3:139935185-140568077 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 49698
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CLSTN2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Genomic Mutations
    1 involving Clstn2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000032788 VEGA Gene Model | MGI Sequence Detail 588787 C57BL/6J ±  kb
transcript OTTMUST00000081641 VEGA | MGI Sequence Detail 4365 Not Applicable  
polypeptide OTTMUSP00000043705 VEGA | MGI Sequence Detail 966 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    6895 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    Genomic 1
    cDNA 15

    Microarray probesets 4
Other
Accession IDs
less
MGI:1924325, MGI:2143055
References
more
  • Summaries
    All 34
    Developmental Gene Expression 6
    Gene Ontology 5
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:226028 Lewandowski JP, et al., Spatiotemporal regulation of GLI target genes in the mammalian limb bud. Dev Biol. 2015 Oct 1;406(1):92-103

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory