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Nif3l1 Gene Detail
Summary
  • Symbol
    Nif3l1
  • Name
    Ngg1 interacting factor 3-like 1 (S. pombe)
  • Synonyms
    1110030G24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1929485
    NCBI Gene: 65102
  • Gene Overview
    MyGene.info: NIF3L1
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:58445156-58462276 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 29.10 cM, cytoband C
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    120 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1929485
protein coding gene Chr1:58445151-58481816 (.)
129S1/SvImJ MGP_129S1SvImJ_G0016052
protein coding gene Chr1:58312829-58353475 (+)
A/J MGP_AJ_G0016035
protein coding gene Chr1:56267904-56311851 (+)
AKR/J MGP_AKRJ_G0015991
protein coding gene Chr1:57792319-57833565 (+)
BALB/cJ MGP_BALBcJ_G0015990
protein coding gene Chr1:56305702-56342530 (+)
C3H/HeJ MGP_C3HHeJ_G0015822
protein coding gene Chr1:58060070-58099005 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016443
protein coding gene Chr1:60654060-60690923 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014165
protein coding gene Chr1:52200909-52237224 (+)
CAST/EiJ MGP_CASTEiJ_G0015404
protein coding gene Chr1:57315445-57357000 (+)
CBA/J MGP_CBAJ_G0015794
protein coding gene Chr1:62441234-62484473 (+)
DBA/2J MGP_DBA2J_G0015895
protein coding gene Chr1:55668717-55705544 (+)
FVB/NJ MGP_FVBNJ_G0015897
protein coding gene Chr1:55009785-55048098 (+)
LP/J MGP_LPJ_G0015967
protein coding gene Chr1:59206356-59245455 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015917
protein coding gene Chr1:65441813-65481640 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016490
protein coding gene Chr1:57764727-57804187 (+)
PWK/PhJ MGP_PWKPhJ_G0015190
protein coding gene Chr1:55061299-55099135 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014971
protein coding gene Chr1:57351721-57391017 (+)
WSB/EiJ MGP_WSBEiJ_G0015467
protein coding gene Chr1:57454228-57494569 (+)



Homology
more
  • Human Ortholog
    NIF3L1, NGG1 interacting factor 3 like 1
  • Vertebrate Orthologs
    11
  • Human Ortholog
    NIF3L1, NGG1 interacting factor 3 like 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ALS2CR1, CALS-7, MDS015
  • Links
    NCBI Gene ID: 60491
    neXtProt AC: NX_Q9GZT8
    UniProt: Q9GZT8

  • Chr Location
    2q33.1; chr2:200889327-200903932 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 65102 NCBI Gene Model | MGI Sequence Detail 17121 C57BL/6J ±  kb
transcript NM_022988 RefSeq | MGI Sequence Detail 2638 C57BL/6  
polypeptide Q9EQ80 UniProt | EBI | MGI Sequence Detail 376 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 80
    Genomic 1
    cDNA 78
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1913428
References
more
  • Summaries
    All 38
    Developmental Gene Expression 3
    Gene Ontology 6
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory